Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00044 ATGGCAATTGCAGCAACAAACTCATCATCACCCACCATGAGCCTCAGCCATAGCCACAGTCATGACGATGCTACTACCACCACTTCCGCTACCAACGAAAACAACAATAAGCTTGCAGATGATCACGAGAACGACACCGTTATGCCCGGGTTTCGATTCCACCCAACTGAAGAAGAGCTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTCATCACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCTTTGGCGGCTATAGGGGAGAAGGAATGGTATTTTTATGTGCCTCGAGATAGAAAGTATCGGAACGGGGATCGTCCAAATCGTGTGACTACGTCTGGGTATTGGAAGGCGACAGGAGCGGATAGGATGATCCGAACCGAAAACTTCCGCTCAATTGGTCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCACAACATGAAACTGAACGATATCAAAAGGTTGAGATATCGCTTTGCCGGGTATACAAGAGAGCTGGAGTTGAAGACCATCCCTCCCTCCCTCGCTGTCTCCCAACAAAGCCATCTTCGTCAAGAGACAAGAAGCTGCACAATGAAATGGTAGGATTTGGTGGACAATCAATATCAAAGGCAATCGATCAGATAAACGAAAGTACGGAGGGAAATGCGGATGTGACGACAGCTCTTGCGCTTTCAAAGCACAATGCTTACCGTGCTGCAATGGGACTACCAATGCCAATGGAGGAGGAAGGGTTGATGATCATGCAGCAGCAGCAGCAATCTAAGCAACAACCACATGCTACCAACTCTTTACTCTCCTCCATCTACCCTGCTGCTACTGGTGGCCCATGCCCAGGCCCAGGCCCTTCTTCTTCGGGTTCATCGAATAACAATGTAGCAGCAGTAGCAATGATGGATGATCTGAACAGGCTAGTGAGTTATCAACAGCAGTTCTACAATGTTCAATTTCAAAGCCATCCCAATCATCACTTATCTACTTTGCTGATGCAACCTCCTGCTCCTGCTGCACCTGTACTACCAATGTCTCTCAACTCACTACCAAATCCACTTCCAACTACCTTCTCTGACCGACTGTGGGACTGGAATCTAATTCCTGAGGTAAATCAAGAGCACAACAACATCTCCTTCAAGCAATGA 1227 0.4751 MAIAATNSSSPTMSLSHSHSHDDATTTTSATNENNNKLADDHENDTVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKVEISLCRVYKRAGVEDHPSLPRCLPTKPSSSRDKKLHNEMVGFGGQSISKAIDQINESTEGNADVTTALALSKHNAYRAAMGLPMPMEEEGLMIMQQQQQSKQQPHATNSLLSSIYPAATGGPCPGPGPSSSGSSNNNVAAVAMMDDLNRLVSYQQQFYNVQFQSHPNHHLSTLLMQPPAPAAPVLPMSLNSLPNPLPTTFSDRLWDWNLIPEVNQEHNNISFKQ. 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00044 408 Gene3D NAC domain 56 197 IPR036093 GO:0003677|GO:0006355
Seca11g00044 408 MobiDBLite consensus disorder prediction 301 320 - -
Seca11g00044 408 SUPERFAMILY NAC domain 47 193 IPR036093 GO:0003677|GO:0006355
Seca11g00044 408 ProSiteProfiles NAC domain profile. 47 194 IPR003441 GO:0003677|GO:0006355
Seca11g00044 408 FunFam NAC domain-containing protein 35 56 197 - -
Seca11g00044 408 Pfam No apical meristem (NAM) protein 49 173 IPR003441 GO:0003677|GO:0006355
Seca11g00044 408 MobiDBLite consensus disorder prediction 1 50 - -
Seca11g00044 408 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 45 282 - -
Seca11g00044 408 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00044 Seca-Chr11 638401 640973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00044 47 210 NAC Transcription Factor Family AT2G02450 90.854 1.90e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g00044 NAM 4.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00044 - - gmx:100792622 507.294