Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00039 ATGTCGGAAATGCGGGTGTCTGATCCAAGCAAGCTTCATCTGAAGAAGGAGCTCACCCAAATTCGTAAGGCTGCTCGTGTATTGAGGGATCCTGGAACAACATCTTCATGGAAGTCTCCACTTAGTTCCTCAAGATCTGTGGCTGCATGGAAGGACAGTGGCAGTAGAAGGTTCAGTGGCAACGGCAATACTCAACTTGATTCAGGGAATGCTATCGCTAACAACAGCAACAATGACAAAGAGAAAGAGAAGAGGGTGTTCTTGTACAACTGGAAGAATTACAAATCGTCGAGCGACAAGAGTGGAGTTGCTAAATACAATGAGGAAGAAGAAGATGGTGGATCTTCATCGCTTCTGGGAAGTTTTGAGGACAGTTTGAGTGATGCTCGCAATGGTTGCGATTCAAAGAGTGATGGTGGAACTCGCTCTTCCATTTTCCGATGTGGAGATGCAAATCTTGTTTCCTTGGGCACTCCTGCAGCTAGAAGAACAGTCCCCATTAAGAAAAAGAGTAAGAAAACCAACCCCCATTTTGATTTTTTAACAAAATACCAACAAAATCTAGGTAGAAAACTTGTGAGTTCCAACTCCAAGGCATTGCTGGAGGAGCATCCTTCAATGCCTTTTTTTACCAGGGATGACTCTGTTGAGCACTCTGATGATACTGAGGATTACTGTCATTCTGAGGATGTGAGACGAGTTTCAGGGGCTTCTCCTTTGCTTCTGAAACTCAAGCATAAGAATTGGTCTCGCTCTTCCTCCAAGTTTTTGAGAAGAAGCCGAAAAGAGGACTCTTCTTATAGTACCCCTGCATTGTCAACCAGTTCTTACAATAGGTACGGTCGCCGGTATCCAAGCACTGTTGGATCCTGGGATGGCACCACAACCTCAATGAATGATGGTGATGTTGATGATGAGATGGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCTAAGAGGACACCTAAACATAGAGGGATGTGTGGGGGTTGTTATTCTCCTTCACTATCAGACACTTTAAGGAGGAAAGGAAGCAGCATACTCTGTGGAAGTCAAACTATTTATCCAAGACACCGGAGAACTGCCTCAGCCTCCCACAAGCGGAGAATTTCTTTGAGGAGTGCTCAAGGTGTTATTCCGTTGCTCACTAACAGTGGTGATGTTAGAGAAGGGTCTTCTATAGGAACTGGAAGGAGTGATGATGAACTTTCTACAAACTTCGGGGAGCTTGATCTTGAGGGCTTGAGCAGACTGGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGAGAAGGGGAGGATGAAGGCACACCAGAAAACAGTAGGAGTTTCAGCCAGAAATATAAGCCTATGTTCTTTGGTGAACTGATTGGGCAGAATATTGTGGTTCAGTCACTCATCAACGCTATTTCAAGGGGTCGAATTGCTCCTGTCTATCTTTTTCAAGGTCCCCGTGGGACTGGTAAAACATCAACAGCTAGGATATTTGCTGCTGCCTTGAATTGTGTGGCTTCTGATGAGAGTAAGCCTTGTGGTTACTGCAGCGAATGTGCTGATTTCATTTCTGGAAAGACCAATGATATAGTGGAAGTTGATGGAACTAATAAGAAAGGAATTGATAAAGCTAGGTATCTACTAAAAAGATTGTCAATTGGGCCTTCATCAGCCTCCTCACGATATACAGTTTTTGTTATTGATGAGTGTCACTTGTTACCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTGGAAGAACCACCTCAGCGAGTTGTGTTCATATTTATTACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTAAGGAAAATATCTGCTCAGGAGAACCTGGATGTTGAAACAGATGCACTGGACCTCATTGCTATGAATGCTGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAGTTATTGGAACTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAGACAGTGAAAAGGGCGAGGGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTAATGTCTCAACTAGCTGGCCTAATTATGGACATAATTGCTGGATCGTATACAGTCATTGATACCAAACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACATCCAGTGAACGCTCAACATGGTTCACAGCAACTCTGTTACAGCTTGGTTCTATACCTTCTCCAGATCTCACTCAGTCAGGCAGCAGCAGGAGGCAGAGCGGAAAAACAACTGAAGATGATCCATCAAGTGCTTCCAGAGACGTTACTTCTTTCAAGCACAAGTCAGACCTCCAATATATGCCTCAAAAGTCAGCATCCCCTGCATCCCAGCAAAAAGCAGTAAATGGCAGTTCCAGCCATCAAAAGGATATATCCTCAAAGATTGATGGTTTCAGCTTGAAATCAAAGCCGTCAAACAGCCCACTCATAGACGATGGCTCCACAGTGGTCTCATCTGATGATCTCATGGTTGCGAATACAATGTTTAGATGCATAGATTCAGGGAAGTTATGTGACATATGGGCACATTGTATTGGGAGGTGCCATTCTAAGACATTGAGGCAGTTGCTACACAATCATGGAAAGCTTGTGTCCATATGTGAAGTGGAAGTACCAGATCTCCCCTCTCCTAATATAGTTCTTCTTTCAGGTGTTCTGGTAGCATATGTTGCATTTGGGGATGGAGATATTAAACTTAGGGCTGAGAGGTTTTTAAGAAGCATTACAAACTCGATGGAAATGGTTCTTAGACGCAATGTGGAGGTGAGAATTATCCATTTACCAGATGATGAAGGTGGAAATCAGGTTAATCTACCAGGTCTAAAGCAGGCAGAGGCTACAGTAGCAAGTGAGAAGGAACAAAGACGAGGTCATATGAATGGAAAAGAGTCTTATTCTAGCTTTCCTCCTTTACTGGATGGAAACCTTCCATCTACCACGGGTTCATCAGATATTCTGGGTGAAGGAAATGGTATGAGGGAGAGGAGACAGGATAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAAAGGTTGGAAACTGCCTGGTTACAGGCAGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCGCAGGATGGTATCTATTGTGTAGACCCAATGGAGTCCATGGATTCAACAAGATTTTCCTCTCATCAACAATGGGAAGATGACACAAATAATGATGGCAAAGTTTTGAGCCTTAAAAATGGAAGAGTCCTTCAGAAGGATCAGATTAGTAAAAGGACAGATCGTTATCCTATGTCTCCAAGTTTATTGCATGACAGCAGTTTAGCAACAATTTCTGGAAAAGATAATATGGGATATGAGTCGGGATCTGGACAAGGAGGTTGTGGATTTTTATGTTGGAATAACTCCAAGACTAGAAGGGTCCTAAAGGTGAAAGCGCGTAAAGTTGGGCGTTTTACATTGTTTGGTGAGTGTGGTAAGCCAAAGAAAAAGGAAGGGAGAAGATAA 3771 0.4307 MSEMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWKDSGSRRFSGNGNTQLDSGNAIANNSNNDKEKEKRVFLYNWKNYKSSSDKSGVAKYNEEEEDGGSSSLLGSFEDSLSDARNGCDSKSDGGTRSSIFRCGDANLVSLGTPAARRTVPIKKKSKKTNPHFDFLTKYQQNLGRKLVSSNSKALLEEHPSMPFFTRDDSVEHSDDTEDYCHSEDVRRVSGASPLLLKLKHKNWSRSSSKFLRRSRKEDSSYSTPALSTSSYNRYGRRYPSTVGSWDGTTTSMNDGDVDDEMDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGGCYSPSLSDTLRRKGSSILCGSQTIYPRHRRTASASHKRRISLRSAQGVIPLLTNSGDVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENSRSFSQKYKPMFFGELIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESKPCGYCSECADFISGKTNDIVEVDGTNKKGIDKARYLLKRLSIGPSSASSRYTVFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISAQENLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVIDTKPDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSIPSPDLTQSGSSRRQSGKTTEDDPSSASRDVTSFKHKSDLQYMPQKSASPASQQKAVNGSSSHQKDISSKIDGFSLKSKPSNSPLIDDGSTVVSSDDLMVANTMFRCIDSGKLCDIWAHCIGRCHSKTLRQLLHNHGKLVSICEVEVPDLPSPNIVLLSGVLVAYVAFGDGDIKLRAERFLRSITNSMEMVLRRNVEVRIIHLPDDEGGNQVNLPGLKQAEATVASEKEQRRGHMNGKESYSSFPPLLDGNLPSTTGSSDILGEGNGMRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIYCVDPMESMDSTRFSSHQQWEDDTNNDGKVLSLKNGRVLQKDQISKRTDRYPMSPSLLHDSSLATISGKDNMGYESGSGQGGCGFLCWNNSKTRRVLKVKARKVGRFTLFGECGKPKKKEGRR. 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00039 1256 Coils Coil 769 799 - -
Seca11g00039 1256 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 463 868 - -
Seca11g00039 1256 FunFam DNA polymerase III subunit gamma/tau 637 699 - -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 813 827 - -
Seca11g00039 1256 FunFam DNA polymerase III subunit gamma/tau 457 635 - -
Seca11g00039 1256 CDD AAA 475 633 - -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 828 848 - -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 96 121 - -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 850 879 - -
Seca11g00039 1256 NCBIfam DNA polymerase III subunit gamma/tau 461 810 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Seca11g00039 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 683 IPR027417 -
Seca11g00039 1256 SMART AAA_5 493 643 IPR003593 GO:0016887
Seca11g00039 1256 MobiDBLite consensus disorder prediction 1059 1074 - -
Seca11g00039 1256 Pfam DNA polymerase III subunits gamma and tau domain III 690 810 IPR022754 GO:0003887
Seca11g00039 1256 Gene3D - 638 699 - -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 32 76 - -
Seca11g00039 1256 SUPERFAMILY post-AAA+ oligomerization domain-like 707 808 IPR008921 GO:0003677|GO:0006260
Seca11g00039 1256 CDD HLD_clamp_pol_III_gamma_tau 636 699 IPR045085 -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 813 879 - -
Seca11g00039 1256 Pfam DNA polymerase III, delta subunit 476 636 - -
Seca11g00039 1256 Gene3D - 453 634 IPR027417 -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 25 79 - -
Seca11g00039 1256 Gene3D - 700 814 - -
Seca11g00039 1256 MobiDBLite consensus disorder prediction 1038 1086 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00039 Seca-Chr11 594219 600945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00039 457 751 Core DNA Replication Machinery Family AT1G21690 23.684 7.28e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00039 - - gmx:100791561 1993.39