Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00031 ATGGAACTTTCCAGCCAAGAAGGAGAAATCCCAATCCCAATAAACACTAGTTATGGTGGGGGACATAATGGGAATGGTCATGGACATGGACACATGAATATTCATCATCATGACCATAACCATAACCATAACCACAACAACATTATATCTTCCTCCCAAAATCCTTCCAATGGTTCCTCTATGCAAGCAGGAGGTGGTGCTGCAGGGTTGGAGGATCATGGAGGCTACAAGAAAGTGCAGGTGAGATACAGAGAATGCCTAAAGAACCATGCAGCTGCAATGGGAGGAAATGCCACAGATGGTTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGGACCATAGAGGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAATTTCCACAGAAAAGAAGTAGAAGGTGACCCTTTGCCTCCTGATCACTTCCACCATTTCAAGCAGCAGAGGAAGTTCCTTTTAGGCCATCATCATCATAAGAACATTCTAGCAACCCCTGAGGCTCTTGGCTACCCTTCAGGTAACATTCTGCCTTCTAGAACTGTCCCACCCCACCACATGATAATGCCCTACAACATAGGACCTCTTCCCTCTGAATCTGATGAACAAGAAGAGGCTGCTGGTGGAGGCATGGTGGCTAGACCCACACAGCTAGTGAAGAAAAGGTTCAGGACAAAGTTCACACAAGAGCAGAAGGAGAAAATGCTAAACTTTGCAGAGAAGGTTGGGTGGAAAATTCAGAAGCAAGAGGAATCTGTAGTGCAACAGTTCTGCCAAGAGATTGGTGTGAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTAGCCAAGAAGAATCTCCCAACTGCTTAA 864 0.4572 MELSSQEGEIPIPINTSYGGGHNGNGHGHGHMNIHHHDHNHNHNHNNIISSSQNPSNGSSMQAGGGAAGLEDHGGYKKVQVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGDPLPPDHFHHFKQQRKFLLGHHHHKNILATPEALGYPSGNILPSRTVPPHHMIMPYNIGPLPSESDEQEEAAGGGMVARPTQLVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNLPTA. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00031 287 MobiDBLite consensus disorder prediction 1 69 - -
Seca11g00031 287 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 43 279 - -
Seca11g00031 287 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 83 132 IPR006456 -
Seca11g00031 287 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g00031 287 FunFam Zinc-finger homeodomain protein 2 210 281 - -
Seca11g00031 287 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 82 133 IPR006456 -
Seca11g00031 287 NCBIfam homeobox domain, ZF-HD class 220 276 IPR006455 -
Seca11g00031 287 MobiDBLite consensus disorder prediction 45 63 - -
Seca11g00031 287 SUPERFAMILY Homeodomain-like 219 281 IPR009057 -
Seca11g00031 287 Gene3D - 209 282 - -
Seca11g00031 287 Pfam ZF-HD protein dimerisation region 80 133 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00031 Seca-Chr11 510981 511844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00031 1 283 ZF-HD Transcription Factor Family AT1G14440 48.515 2.28e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca11g00031 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00031 - - qsu:112015870 344.354