Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00020 ATGGATCATGAGAGGGACCTGGAGACAGAGGGGATGATGCCGATGGGGAACAATGGCAAAGAGGAAAGGACAGAGACAAGATCAGGACTAGAGAGGCTCAGAGAGCCTCTGCTTTTGAAGAATAACAGGATGAACACCACCTCCCAACTTGCCATTATCGGAGCTAATGTTTGTCCTATTGAAAGTCTTGACTACGAGATCATTGAGAATGATCTTTTCAAGCAAGACTGGAGGTCTAAAGCAAAGGCTGAGATAGGCCAGTATGTTGTCCTCAAATGGGCCCTTGCACTTCTTATTGGCTTAAGCACAGGGCTCGTTGCCTTCTTCAATAACATTGGAGTTGAGAATATTGCTGGTTTTAAGCTTCTATTCACCAACAATCTCATGCTCTCGCAAAAGTATTATCAGGCCTTTGCAGTGTATGTTGGTTGTAACATGGTTTTAGCCATTGCTGCTGCAGTCCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGGTCCGGCATTCCTGAGGTGAAGGCATACCTCAATGGTGTAGATGCTCCTTCTATATTGGCTCCAAGTACCCTCTTTGTAAAGATTTTTGGTTCAATTTTTGGGGTTGCGGCCGGTTTTGTTGTGGGCAAGGAAGGACCTATGGTACATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGTGGTTCTAGAAAATATGGGTTGACCTGGAAATGGCTCAGGCATTTTAAAAATGACCGAGATCGAAGGGATTTGATCACATGTGGTGCAGCTGCTGGCGTTGCTGGTGCCTTCCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGAAGTGCTCTTCTGTGGAGGACTTTTTTTACAACAGCTGTAGTAGCTGTAGTGCTGAGAGGTTTCATGGAATTTTGTCGGGCTGGAAAATGTGGTCATTTTGGGGAAGGAGGTTTGATAATGTTTGATGTTAATTCTGCAAATCCTGCATATAGCATACCTGACCTCCTTGTAGTTATATTTCTTGGAGTTATTGGAGGTCTTTTGGGAAGCCTTTACAATTATCTTGTGAATAAGGTCCTCCGCACTTACAGCATCATAAATGAGAAAGGCCCTATATTCAAAATTCTACTTGTCATTATCATCTCCATTTTGACCTCTTGCTGTTCATTTGGCCTTCCATGGCTATCAAAGTGTATCCCTTGTCCACCTCACTTGGGGGATCAGTGCCCAACTGTGGGGCGCTCCGGAAACTACAAGAATTTTCAGTGTCCACCTAACCACTACAACGACCTTGCCTCTCTCTTTTTTACTACTAACGATGACGCTATTCGCAATCTGTTTATTTCTGGTTCTGACAAAAGATTTCTTCTGTCTAGTCTTCTAATTTTCTTTGTGGCCATGTACTTTCTCGGAATCATCACTTATGGCATTGCCATTCCCTCTGGCCTCTTTATTCCTGCCATACTTGCAGGAGCTTCTTATGGGCGTGTTGCAGGAAGTCTCTTGAGTCCATTCACTGTTCTTGATGTGGGTTTGTTTGCCCTTCTTGGGGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCCCTGTGTGTCATACTTCTTGAACTCACTAATAACCTGCTGATGCTCCCATTGGTAATGTTGGTTCTCCTTATTTCAAAGTCTGTAGCTGATTGTTTCAACAAAGGAGTTTATGATCAGATTATGGAAATCAAGGGGCTACCTTATATGGAAGCACATGCAGAGCCATACATGAGACAATTAATTGCTAGTGATGTTGTTACTGGTCCATTGTTTACATTTTCTGGGATTGAAAAAGTGGGGAATATTGTGCATGCTTTAAAGGTCACAAGACACAATGGATTTCCTGTAATTGATGAACCTCCTTTCTCAGATGCTCCTGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTACTTGTACTTCTTAAACACAGAACATTCACAAAGCAAAGGGGAATGACTGGGTCCTCCATTATGAAGAAGTTTAAGGCACATGATTTTGCAAAGCCAGGTTCAGGCAAAGGGATCAAGCTGGATGATTTAGACATTTCTGAGGATGAAATGGAAATGTATGTTGATCTCCATCCTATTACCAATAGGTCACCATATACAGTTGTGGAAACTATGTCTCTAGCTAAAGCTGCTGTTCTTTTCCGCGAGCTTGGCCTTAGGCACTTGTTAGTGGTGCCACAAACACCTGGAAGGCCTCCAATTGTCGGGATCCTAACAAGGCATGATTTCATGCCTGAGCATGTCTTGGGACTGTATCCTAAATTCAACCCCCACAAGTAG 2328 0.4386 MDHERDLETEGMMPMGNNGKEERTETRSGLERLREPLLLKNNRMNTTSQLAIIGANVCPIESLDYEIIENDLFKQDWRSKAKAEIGQYVVLKWALALLIGLSTGLVAFFNNIGVENIAGFKLLFTNNLMLSQKYYQAFAVYVGCNMVLAIAAAVLCAYIAPAAAGSGIPEVKAYLNGVDAPSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTWKWLRHFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRAGKCGHFGEGGLIMFDVNSANPAYSIPDLLVVIFLGVIGGLLGSLYNYLVNKVLRTYSIINEKGPIFKILLVIIISILTSCCSFGLPWLSKCIPCPPHLGDQCPTVGRSGNYKNFQCPPNHYNDLASLFFTTNDDAIRNLFISGSDKRFLLSSLLIFFVAMYFLGIITYGIAIPSGLFIPAILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIMEIKGLPYMEAHAEPYMRQLIASDVVTGPLFTFSGIEKVGNIVHALKVTRHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKHRTFTKQRGMTGSSIMKKFKAHDFAKPGSGKGIKLDDLDISEDEMEMYVDLHPITNRSPYTVVETMSLAKAAVLFRELGLRHLLVVPQTPGRPPIVGILTRHDFMPEHVLGLYPKFNPHK. 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00020 775 ProSiteProfiles CBS domain profile. 710 770 IPR000644 -
Seca11g00020 775 SUPERFAMILY Clc chloride channel 70 584 IPR014743 -
Seca11g00020 775 SMART cbs_1 713 764 IPR000644 -
Seca11g00020 775 SMART cbs_1 602 655 IPR000644 -
Seca11g00020 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 585 762 - -
Seca11g00020 775 Pfam CBS domain 711 759 IPR000644 -
Seca11g00020 775 Gene3D - 582 765 IPR046342 -
Seca11g00020 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 38 765 - -
Seca11g00020 775 FunFam Chloride channel ClC3 84 398 - -
Seca11g00020 775 SUPERFAMILY CBS-domain pair 586 760 IPR046342 -
Seca11g00020 775 CDD ClC_6_like 61 582 - -
Seca11g00020 775 PRINTS Plant CLC chloride channel signature 277 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g00020 775 PRINTS Plant CLC chloride channel signature 309 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g00020 775 PRINTS Plant CLC chloride channel signature 433 449 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g00020 775 PRINTS Plant CLC chloride channel signature 291 301 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g00020 775 PRINTS Plant CLC chloride channel signature 66 74 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca11g00020 775 MobiDBLite consensus disorder prediction 1 28 - -
Seca11g00020 775 Pfam Voltage gated chloride channel 149 563 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g00020 775 Gene3D Clc chloride channel 84 581 - -
Seca11g00020 775 PRINTS Chloride channel signature 531 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g00020 775 PRINTS Chloride channel signature 513 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g00020 775 PRINTS Chloride channel signature 256 275 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g00020 775 PRINTS Chloride channel signature 569 583 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g00020 775 PRINTS Chloride channel signature 161 178 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g00020 775 PRINTS Chloride channel signature 481 501 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca11g00020 775 PRINTS Chloride channel signature 192 211 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00020 Seca-Chr11 358352 363790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g00020 2 775 Ion Channels AT5G49890 76.258 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00020 K05016 - cave:132178584 1204.89