Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g00009 ATGATGCGAGAGAAAGACAATAGGAATAAGGAGGGAGATGGTGAAAATAACTTGAATTCCAGTAATGAAGACAATGTATGTTCTGATGATGTTGTTCCTGATGTGTTGAAAAGGATTTCTGAGTTAAGTGATGGCGATATTAGATCGCTTGAATTTGATTCTGAACAGGATGCATATGAATTCTATAGTGAATATGTGAAATTTAAAGGATTTGTTGTTAGGAAAGATGACGTTTATCGTGATCGGGATAAGCGTATTAAAATGAGACAATTGGTATGTAATAGGCAAGGGGAGATGAGTGAGAAGCATTTAAATAGAACAAATAGAATTAAAGAAACTAAGACCATTACTCGTACCAATTGCCTTGCAAGGATTCGCTTGTACCTAGATAATAAAAATAATAAGTGGAGGGTTGGAATGTTTGAGTCAGAACACAATCATGAGCTAACTCCTGCAAATATGGTACGTTTGATGCCTGCTTATCGTGGATTGAGTGTTGCTGATAAGGCACAAGTAAACAGTCTTCACTTATACGGTGTAAGGACATGTCATATAATGGGGCTAATAATGGGTCAGAAGGGTGGTCATTCAGACCTGGGATTTTGTAAGAAGGACTTCTACAATCACATTGGCAAGGAGAATAGGGCCAAAATAGAGGATGTAGATGCTTTTGCTGCTTTGTGCTATCTTCAAGCTAAGTATGATAGTAATCCGATGACATTTGTTAAGTTCACTACCACTGAAGATGATAGACTTGAAAACTTGTTATGGGTTGATGTAGGCAGTAGAATTGATTATCTATGCTTTGGGGATGTAGTTGCTTTTGACACAACTTATAAAAAAAAGTATAACAGGCCTTTAGTAATTTTTTATGGTTATAACCATCATGGTGAAACCACAATATTTGGTTGTGCTCTTGTAGCTGATGAGAAGACAGAAACATATAAATGGGTGCTTGAAACTTTTCTTGAAGCCATGCTCAATAAAGTACCTAAGGCAGTTGTTACTGATGGGGATGGTGCCATGCGTGAAGCTATAAGGACTATTATTCCAGGTTCTGTTCACAGGCTATGTTCATGA 1080 0.3713 MMREKDNRNKEGDGENNLNSSNEDNVCSDDVVPDVLKRISELSDGDIRSLEFDSEQDAYEFYSEYVKFKGFVVRKDDVYRDRDKRIKMRQLVCNRQGEMSEKHLNRTNRIKETKTITRTNCLARIRLYLDNKNNKWRVGMFESEHNHELTPANMVRLMPAYRGLSVADKAQVNSLHLYGVRTCHIMGLIMGQKGGHSDLGFCKKDFYNHIGKENRAKIEDVDAFAALCYLQAKYDSNPMTFVKFTTTEDDRLENLLWVDVGSRIDYLCFGDVVAFDTTYKKKYNRPLVIFYGYNHHGETTIFGCALVADEKTETYKWVLETFLEAMLNKVPKAVVTDGDGAMREAIRTIIPGSVHRLCS. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g00009 359 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g00009 359 Pfam MULE transposase domain 272 358 IPR018289 -
Seca11g00009 359 Pfam FAR1 DNA-binding domain 60 150 IPR004330 -
Seca11g00009 359 PANTHER OS01G0519700 PROTEIN 49 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g00009 Seca-Chr11 240457 241536 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g00009 FAR1 1.4e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g00009 - - ccaj:109792835 384.03