Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05490 ATGATGTTGGATGAGTTGGAAGATGGGGGGAAAGTTTATCTTGTCTACCCAATTATTGAACTTTCTGAGCAGTTACCTCAGCTTCGTGCTGCTTCTGCAGATCTTGAAGTTATATCAAACCGGTTTCAAGGATACAATTGTGGTTTGTTACATGGAAAAATGAAAAGTGATGAAAAAGATGAAACATTGAAAAAGTTTAGGAGTGGAGAAATGCATATACTACTTGCCACTCAAGTAATTGAAATTGGTGTTGACGTTCCAGATGCATCTATGATGGTTGTGATGAATTCTGAGAGGTTTGGTATTGCGCAATTACACCAACTCAGGGGACGAGTTGGACGCGGAACAAGGCAATCAAAATGTATACTAATAGCATCAACTGCCAGTTGCATAAATCGTTTGAAAGTACTGGAGCAATCATCAGATGGGTTTTATCTTGCTAATATGGACCTTTTATTACGTGGACCTGGTGACTTGCTTGGCAAGAAACAATCTGGACATCTTCCTGAGTTTCCTGTTGCCAGATTGGAAGTTGATGGAAATATTTTACAAGATGCACACGTTGCTGCACTGAAAATTTTAAGTGCTTCCCATGATTTGGGGCAATTTCCTGTACTTAAATTGGAGCTTAGCATGAGACAGCCGCTTTGCCTGCTAGGTGATTAA 666 0.3994 MMLDELEDGGKVYLVYPIIELSEQLPQLRAASADLEVISNRFQGYNCGLLHGKMKSDEKDETLKKFRSGEMHILLATQVIEIGVDVPDASMMVVMNSERFGIAQLHQLRGRVGRGTRQSKCILIASTASCINRLKVLEQSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPVARLEVDGNILQDAHVAALKILSASHDLGQFPVLKLELSMRQPLCLLGD. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05490 221 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 141 198 IPR045562 -
Seca10g05490 221 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 1 216 IPR047112 GO:0006281
Seca10g05490 221 Gene3D - 1 196 IPR027417 -
Seca10g05490 221 SMART helicmild6 19 116 IPR001650 -
Seca10g05490 221 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 152 IPR001650 -
Seca10g05490 221 Pfam Helicase conserved C-terminal domain 6 115 IPR001650 -
Seca10g05490 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 170 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05490 Seca-Chr10 124131259 124133068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05490 41 160 Eukaryotic Initiation Factors Gene Family AT3G19760 26.667 1.22e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05490 K03655 - lja:Lj0g3v0084329.1 399.438