Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05466 AAAAACCTATCTTGTTTCTCCCGAGGGGAGGGATCAGTGAAACTGAAACCTATCTTCTTTTCTTCCATTCTTCTGTTACAGTTATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATATTGGCGAATAACATGTTAGCTTCCACTCTCCTAACACCTTCTAACCTCAACCCTTCCCATTTCCTCCCTCCAACCACCAGACTTTCAGAAATCCTTCCACGAAGCAGAGTCGCATTCTCTTCCAAATCAAACACCAAAATTTCCCTCGTTGTTAGGCTCAGTACCAACGGTCACGATGGTGCCGTTGATGCTACCTCGCTCCAGGGCATTGATGCAGTAGAAAGTGAATCTTCTGGTCTAGGTGATGGTTATGTGGCCTTGTTTGTTCGTATGTTAGGCCTTGATCGTGATCCTCTAGATAGAGAACAAGCTATAATTGCTCTTTGGAAATATTCGCTTGGTGGAAAAAAATGTATTGACACTTTAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTTAGATCAGAGTCTAGTTCAGCATGTGAGGCAGCTGCAGGCCTTCTGCGATCATTATCTTCGGTCAATCTATATAGGAATTCTGTAGCAGACAGTGGTGCAATAGAAGAGTTAAATAGACTGCTGAGTCAATCTTCCTTGGCAACTGAGGTAAAGGAGCAAAGTATGAGTACACTGTGGAATTTATCTGTGGACGAAAAGCTCTGCATTAAAATTGCAAAGAGTGATATTCTGCTGTTAGCTATTAAGTATCTTGATGACGAGGATATGAAAGTGAAGGAAGCTGCAGGAGGCATTTTGGCAAATTTAGCACTGAGCCGTGCTAATCACAACATCATGGTTGAAGCAGGTGTTATACCGAAATTGGCAAAGTTCTTAACGTCGAACTCAGAAGGATCCAAAGTCATTAGAAAGGAAGCAAGGAATGCATTGCTGGAACTTGTTAAGGACAAGTATTATAGAATTCTTGTTATTGAGGAAGGTTTGGTTCCTGTGCCATTAATAGGTGCTGCAGCCTATAAGTCATTCAACCCAGGTTTACATTTGTGGCCCACATTACCAGATGGTACAGAAATTGAAAGGGCTTCTAGTCAACCTTCCAGATTTGGTGCATCAGAATTACTTCTTGGATTAAATATTGATGACAGGAATGCTTACATAGAGGAAGCAAAAATCAATGCAATTATTGGACGAACACAACAACAATTCCTTGCTCGTATTGGGGCTATAGAAATGGAAGAAAAGACAATACCTCATTCTGAATGCTCAAATGATCAGCGGCTTACACTTTTACCTTGGGTGGATGGTGTTGCTCGTTTAGTACTGATACTAGAACTAGAAGATCAATCAGCCATATTAAGAGCTGCAGAGTCAATTGCTAATGCATGTATCAACGAACATATGCGTATTGCATTTAAGGAGGCTGGGGCAATTAAGCATTTAGTACGGCTTTTGACTTTTGATGATAATGCGGTCCAGATAGCGGTAACACAAGCTTTGGAAAGGCTGTCTGCTAGCAATGTTGTTTGCCGAGTAATTGAAGCTGAGGGTGTTTTAGGTCCTTTAGTCAGTATTTTGAAACGCTCAGAGATATCTGAAACTATTGTGGAAAAGTCTTTGAACATACTTGCGCGGATATTAGACCCCAGTAAAGAGATGCAATTGAAGTACATTGATTCTTTTCAGTTTTATGATGGATCAGTTAATGTATCTGAGAAGGCATTTGGTGGACCCAAAAATGATGATATCTCAACAGGATTAAGTAGCACTGAGCAAGCCGTATCAAAAACAAATACCAGGAATGATATACTAGATTCTGTTTTCATTGCAAACCTTGTTGAGATTCTAAAGTCCTCTTCACCCAATTTACAAGAAAAGGCTGCATCTGTGCTCGAGTTTGTGGCATTGACTGACCCAACTCTTGACCCAATTATATCTGTGGATATTGAAAATGGTCTCAATTCTGCTTTTCAGCAAAAAATTTTGAAAATTTCAGTGGACATGGAATCTGATGTGGAAGATCAGTTTTCAGAAGCATATGCTATTGAATTTGAAGAAGCTGGTCTTGCAATATCTGCAGCATCCCGATTACTAACAAGACTACTGGATTGTGAGCAGTTTCATCATAAAATAAATTTCTCCAATTTTATTGGTATGCTTCGTGAAATCCTCAGGTCCAATATTCCCCTCCACAACAAAGATTGGGTAGCTGCTTGCCTAGTTAAACTAAGTTCTCTCTCTGGTCACAACATGAGTTTTAATCCAATCAATGTGGAAGTTACACTTTATGAGACAATCCCAAGACTTGTAGAACAGATCAAAACTTCATTCTCACCAGAAGCACAGGAAGATGCTGTTGTAGAACTTAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGAAGCTATTATTTCTGGGGGTGCAGTATATCCATTGGTGAAGCTGATTGAAGATGGCAGTGAAAGGGCTGTTGAAGCAAGCTTGGCAATACTGTATAATCTGAGTATGGACAGTGAGAACCATTCTGCACTTGTGGCCGCTGGAGCAGTCCCAGCCTTAAGAAGATTTGTTCTATCACACAGACCACTGTGGGAAAAGGCACTTCTTTTACTAAGGAGTTTGCAAATGTGA 2658 0.4018 KNLSCFSRGEGSVKLKPIFFSSILLLQLSSSSSSSSSSSILANNMLASTLLTPSNLNPSHFLPPTTRLSEILPRSRVAFSSKSNTKISLVVRLSTNGHDGAVDATSLQGIDAVESESSGLGDGYVALFVRMLGLDRDPLDREQAIIALWKYSLGGKKCIDTLMQFPGCINLVVNLLRSESSSACEAAAGLLRSLSSVNLYRNSVADSGAIEELNRLLSQSSLATEVKEQSMSTLWNLSVDEKLCIKIAKSDILLLAIKYLDDEDMKVKEAAGGILANLALSRANHNIMVEAGVIPKLAKFLTSNSEGSKVIRKEARNALLELVKDKYYRILVIEEGLVPVPLIGAAAYKSFNPGLHLWPTLPDGTEIERASSQPSRFGASELLLGLNIDDRNAYIEEAKINAIIGRTQQQFLARIGAIEMEEKTIPHSECSNDQRLTLLPWVDGVARLVLILELEDQSAILRAAESIANACINEHMRIAFKEAGAIKHLVRLLTFDDNAVQIAVTQALERLSASNVVCRVIEAEGVLGPLVSILKRSEISETIVEKSLNILARILDPSKEMQLKYIDSFQFYDGSVNVSEKAFGGPKNDDISTGLSSTEQAVSKTNTRNDILDSVFIANLVEILKSSSPNLQEKAASVLEFVALTDPTLDPIISVDIENGLNSAFQQKILKISVDMESDVEDQFSEAYAIEFEEAGLAISAASRLLTRLLDCEQFHHKINFSNFIGMLREILRSNIPLHNKDWVAACLVKLSSLSGHNMSFNPINVEVTLYETIPRLVEQIKTSFSPEAQEDAVVELNRIISEGVVDSTEAIISGGAVYPLVKLIEDGSERAVEASLAILYNLSMDSENHSALVAAGAVPALRRFVLSHRPLWEKALLLLRSLQM. 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05466 885 Gene3D - 121 350 IPR011989 -
Seca10g05466 885 SUPERFAMILY ARM repeat 128 344 IPR016024 -
Seca10g05466 885 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 82 884 - -
Seca10g05466 885 Gene3D - 430 661 IPR011989 -
Seca10g05466 885 Gene3D - 693 884 IPR011989 -
Seca10g05466 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 816 858 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 240 280 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 514 556 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 805 845 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 281 324 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 604 644 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 155 196 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 197 239 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 473 513 IPR000225 GO:0005515
Seca10g05466 885 SMART arm_5 846 885 IPR000225 GO:0005515
Seca10g05466 885 SUPERFAMILY ARM repeat 443 867 IPR016024 -
Seca10g05466 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 167 209 IPR000225 GO:0005515
Seca10g05466 885 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 208 241 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05466 Seca-Chr10 123818555 123827976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05466 123 343 U-box Gene Family AT2G23140 29.911 1.36e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05466 - - gmx:100810447 1301.58