Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05463 ATGAGCAAATCCAACACTACTTTCTTTCACAATCTCATAAAACCCTTCAAATTCGGATCCAGTAAACAGGCGAAGAGTGAAGACGACATAGAGAACATTACTGCACAGGAACAGAAGACCTTTTCTTACGAAACATTGGTTGCTGCTACAAAGAACTTTCACGTTCTTAACAAGCTTGGTGAAGGAGGCTTTGGACCCGTCTACAAGGGGAAATTGAATGATGGGAGAGAGATAGCAGTGAAGAAGTTATCACAAAGGTCATCTCAAGGGAAGACACAGTTCATAAACGAGGCAAAGTTGTTGACTCGTGTGCAGCATCGTAATGTGGTGAATTTGTTTGGCTATTGTGCCCATGCCTCACACAAGCTTCTAGTTTATGAGTATGTCCCACGTGAGAGCCTTGATAAGCTTCTATTCAGATCACACAAGAAAGCAGAGCTAGATTGGAAACGTAGGTTTGACATAATCAATGGGGTGGCAAGGGGTTTGCTTTATCTACACGAAGACTCACACAATTGCATAATCCATCGTGACATAAAGGCTGCAAATATCTTAATCGATGAAAAATGGGTGCCTAAGATTGCAGACTTTGGCCTTGCACGCCTCTTCCCCGAAGATCAAACTCATGTTAATACACGTGTGGCTGGAACCAACGGGTATATGGCTCCGGAGTACATGATGCATGGACATCTAACGGTGAAGGCAGACGTGTTTAGCTTTGGGGTTTTGGTGTTGGAGCTGATCACTGGCCATCGTAATTCCTCCTTTAATTTGGACAACGCAATCAATCTCCTCGACTGGGCATACAAGCTTTACAAGAAAGGGAGGGCATTAGAAATGGTGGACCCCTCAATAGCATCTTCTGTGATAACAGAACAGGTGGAAATGTGCATTAAATTGGGTTTATTGTGCACACAAGCTGAACTTCAGTTGCGTCCAACAATGGGGCGTGTGGTGGTGATGCTATCAAAGAAGCCAAGCCACATGGAAGAACCAACAAGACCAGGCATACCTGGTTCCAGATACAAATCAAGATTACCACCAACAATCTCTTCTTCTTCTTCCACTGCTGGTGCTCATGATGATTCCTCTAACACTAATTTTGATTCAAGCAATTATGGCACTACCATTTCTAGAACAAGAACAAGCTCTGCTAGCACAGAATCAAACTCGCGAGGAAAACGTCCAATGCAAGCTTAG 1200 0.4367 MSKSNTTFFHNLIKPFKFGSSKQAKSEDDIENITAQEQKTFSYETLVAATKNFHVLNKLGEGGFGPVYKGKLNDGREIAVKKLSQRSSQGKTQFINEAKLLTRVQHRNVVNLFGYCAHASHKLLVYEYVPRESLDKLLFRSHKKAELDWKRRFDIINGVARGLLYLHEDSHNCIIHRDIKAANILIDEKWVPKIADFGLARLFPEDQTHVNTRVAGTNGYMAPEYMMHGHLTVKADVFSFGVLVLELITGHRNSSFNLDNAINLLDWAYKLYKKGRALEMVDPSIASSVITEQVEMCIKLGLLCTQAELQLRPTMGRVVVMLSKKPSHMEEPTRPGIPGSRYKSRLPPTISSSSSTAGAHDDSSNTNFDSSNYGTTISRTRTSSASTESNSRGKRPMQA. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05463 399 Gene3D Phosphorylase Kinase; domain 1 16 128 - -
Seca10g05463 399 Gene3D Transferase(Phosphotransferase) domain 1 129 334 - -
Seca10g05463 399 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 24 369 - -
Seca10g05463 399 Pfam Protein kinase domain 53 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05463 399 ProSiteProfiles Protein kinase domain profile. 53 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05463 399 MobiDBLite consensus disorder prediction 345 399 - -
Seca10g05463 399 FunFam Cysteine-rich receptor-like protein kinase 10 130 334 - -
Seca10g05463 399 MobiDBLite consensus disorder prediction 323 399 - -
Seca10g05463 399 SUPERFAMILY Protein kinase-like (PK-like) 38 346 IPR011009 -
Seca10g05463 399 CDD STKc_IRAK 59 324 - -
Seca10g05463 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Seca10g05463 399 FunFam Cysteine-rich receptor-like protein kinase 10 17 128 - -
Seca10g05463 399 SMART serkin_6 53 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05463 Seca-Chr10 123764448 123771381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05463 31 368 Receptor kinase-like Gene Family AT4G11530 47.965 5.02e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca10g05463 Pkinase 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05463 - - gmx:100811523 596.275