Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05456 ATGGCAATGGTTCCTGCTGGGTTCCATACTATTAACAGCCTTTGTGGCCGAAGGCAAATCTGGAGATTGAGAGTCAAAGTTGTTCGCCTTTGGAATATGTGTGTTGTTGCTACTCCAAATGATCCGTTTGCAATGCAAGTGCTCCTTGTGGACGAAGAGGGTGGCCGTATTGAAGCAACTATTAAGAAGCAGAATATGAAGAAGTTTGCCAACTTGTTGGTGGAGGGGCAAGTGTATAAGATAATTGATTTTGGGATCACCTCAAACTTTGGGAAGTTTAGGGCAGCTGGACATGACTACAAGCTCACTTTCAATGGTAGCACGAGGATTATTCCCTTTCCAAACGTGGCCATTCCTTTCCATGGGTTGTCCCTAACCAAAAGTTCTGATATACTCAAAACAAAGGGGCGTTCAGATTATTTAGTTGATTTTATGGGGGTGTTGACTGCTACTTCAGATGAGATGACATTGGTTTCTAAGGATGGAAGGGAAACAAGACTACTTCTGTTGGACCTGGTCGATGAAATGGGGAAGTTACGTTGTGCTATTTTTGGAGATTTCATTGACACCGTTGCTGCGTTTCTATCTCTTCCTCGATGTGGGCTGCCAGTTGTTATTGTCCAACTCGCAAGGGTGAATATTTATAAGGGTGAGGTAGGGATCCAAAATGTTATGAACGCCTCCAAGGTGCTATGGAATCCAGACATTCCAGAAGCAATAGAATTTAAAAATGGCTTGGCTGTGCATGAGGTAGAATCTGAAGTTGATATTGGGATGATCGTTGAGCGAAGAACTATTGTTCCTCTAAGGGAAGATTTCTTGAAACTTACTCGTAGGAAAACAATTAGGGACCTCACAGAGATTGAAGAGGCTGGATGTTATGTTTTGTTAGGCACTGTAACTGAAATCTGTGATGATTCCCTATGGTGGTACATGGCTTGCATATGTTTAAAGTCTGTTAAACATGATGGAGTGACTTATTATTGTCGTGATTGCAACACTCATATGTTCCATGCGACGCCAAGGTATAAGCTAAAGATTGAAGTGACCGATGGAGCCGAACAGGCTAGGTTGGTTATTTTTTATGTTGAGTGCTTCACATTATTCAATCGTGCTTGCAAAGACATGTTGTTGGAGTCCAAGAAACACTCAACTGATCAATGCCCCATTGAGATCACGAGTTTGGTTGGAAAAGAATTCCTTTCCAAAGTGGAAACCAAATTGGACGACTCCATAGCAATTGATGACTGCTATCCAGTTAAGAGGATATGCTTTGACTCCACCATTATTTCTGAATACAAGGCTGAACTCATTATTGAGACACCACTAAAGCAAAAATTTTCACCTGTGTTCCCCACAATTGGGTATGGTGACGGGAGTGCAAGTCTCTGTGATCACAATACCGAATCAACCTCTGTGGTCACTGTGGTTGATGTCAACCTAGACTCTTGTGCGCAATCCTCAAGCACACCACAAGAAGAACCAACCTGCTCTAAACGTCAGGGTGATGATTCAGTGGATGCCCCTGTGGAGAGAACAAAACGAGGGAAGCTACTGCCAATCAAGATGGAGAAGATATGA 1581 0.4276 MAMVPAGFHTINSLCGRRQIWRLRVKVVRLWNMCVVATPNDPFAMQVLLVDEEGGRIEATIKKQNMKKFANLLVEGQVYKIIDFGITSNFGKFRAAGHDYKLTFNGSTRIIPFPNVAIPFHGLSLTKSSDILKTKGRSDYLVDFMGVLTATSDEMTLVSKDGRETRLLLLDLVDEMGKLRCAIFGDFIDTVAAFLSLPRCGLPVVIVQLARVNIYKGEVGIQNVMNASKVLWNPDIPEAIEFKNGLAVHEVESEVDIGMIVERRTIVPLREDFLKLTRRKTIRDLTEIEEAGCYVLLGTVTEICDDSLWWYMACICLKSVKHDGVTYYCRDCNTHMFHATPRYKLKIEVTDGAEQARLVIFYVECFTLFNRACKDMLLESKKHSTDQCPIEITSLVGKEFLSKVETKLDDSIAIDDCYPVKRICFDSTIISEYKAELIIETPLKQKFSPVFPTIGYGDGSASLCDHNTESTSVVTVVDVNLDSCAQSSSTPQEEPTCSKRQGDDSVDAPVERTKRGKLLPIKMEKI. 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05456 526 SUPERFAMILY Nucleic acid-binding proteins 6 116 IPR012340 -
Seca10g05456 526 Gene3D - 272 423 IPR012340 -
Seca10g05456 526 PANTHER OS03G0429900 PROTEIN 226 406 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca10g05456 526 CDD RPA1_DBD_B_like 143 243 - -
Seca10g05456 526 SUPERFAMILY Nucleic acid-binding proteins 277 417 IPR012340 -
Seca10g05456 526 Pfam Replication factor-A C terminal domain 298 409 IPR013955 -
Seca10g05456 526 Gene3D - 8 115 IPR012340 -
Seca10g05456 526 MobiDBLite consensus disorder prediction 497 516 - -
Seca10g05456 526 CDD RPA1_DBD_C 280 409 IPR047192 -
Seca10g05456 526 MobiDBLite consensus disorder prediction 485 516 - -
Seca10g05456 526 SUPERFAMILY Nucleic acid-binding proteins 124 247 IPR012340 -
Seca10g05456 526 CDD RPA1_DBD_A_like 22 110 - -
Seca10g05456 526 Gene3D - 116 254 IPR012340 -
Seca10g05456 526 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05456 Seca-Chr10 123660978 123664319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05456 4 351 Core DNA Replication Machinery Family AT2G06510 22.016 1.28e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05456 - - lja:Lj6g3v0884310.1 345.51