Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05446 ATGAGTATTCAATCCATAGACATGGAGAAAACTTGGTTCATTTTCACTTTTTTCTTGTCAATTCACCATTTCATGGCCTCCTCAGATACAATTAGCAACACCAACTTCACTCATGTGGACCAATCTGCACTCTTAGCCTTTAAATCTCATATCACTTTTGATCCTCAACACATCTTGGCCAATAATTGGTCTACCTCTTCTTCTATATGCAATTGGTTTGGGGTCACTTGTGATTCCAACAATGGAAGGGTCATAGGTATAACTCTCACAAACATGAATCTAAATGGCACCCTTCCACCTCACTTAGGGAACTTAACTTTTCTTGTTGATCTTGATCTTCACAACAATAGCTTTTATGGAATTCTACCAAAAGAGTTGGTCTTGTTACCTGGATTGAAGATGGTAAACTTGTGTACCAACAAATTTGGTGGAGAATTTCCAACATGGATGGGGGAGTTATCTAAACTCCAAAACTTGAGTCTTTGCAATAACAGTTTTTCAGATTCAATTCCTTCATCCCTGTCCAACTTGTCACAGCTTGAGACTTTGGATTTGAGCTTTAATTTCTTACATGGGAACATTCCACCTGAGCTTGGAAGGCTTCAAAACTTGACGGTTTTGGATTTGGCACACAATCAATTATTCAATGGCATCCCTTCTTCAATCTTCAATATCTCAACATTACAAGTGATCAATTTTGAGTATAATTCCTTTTCAGGAAGTATCTCTCAAAATGTTGGCGATCTACCACAACTAAGAAGTATAAATTTGAGCAAAAATAACCTTTCAGGCTCCATTCCATGGTCCTTGTTCAATTTGTCTATGCTTCAAGAGATTCAATTCATTTACAATAACATATCTGGCACTTTACCATCGGATTTGTGTCATGGGGTTCCAATGCTTGAGAAGCTTGACCTCTCTGGGAATGCATTTTCTGGTCAAATTCCATCAAGTTTGCATCAATGTAAAAAGCTCAAATATCTAAAGATGATCAGCAATAGATTTTATGGTCAACTACCAAGTGAAATTGGGAGATTATCTATGCTTCAGGAGTTAGATCTCAGCAACAACAATCTATCAGGTTCACTTCCACCATCTCTTTTCAACATATCTTCTTTAAGACTAATAAATCTTCGGAACAACATGTTTAGTGGTCAACTTCCAGAAGAAATGTGCCAGCAAGCTCACTCACTTCAACAGATTTCTATATTAAACAACAGAGTTGGAGGAACCGTTCCAAGGTCCATTAGCAACTGCACTTCATTGAAGCGCTTATTCCTAGGAGTAAACTTTTTTACAGGTACCATACCCAATGAGATTGGTGACTACTTAAAAAACCTTGAGCAATTGCATTTGCAAGGTAATAGACTAAGAGGGTCTATTCCTTCAAACATCTTTAACATCTCAGGGTTGAAAAGCTTGTCACTATCAAATAACCAACTTTCAGGCAATCTTCCAATTTATGCATATTATAACCTTTCAAGCCTCCAATTCTTGTACCTTTCAGCCAACAATCTTAGTGGAGAAATTCCAAGTAGCCTTTTCAATGCTTCAATGCTTCTTGAATTAGTCCTTGCCAACAATACATTCACAGGAGTTATACCTGACTCAATTGGGAATTTGAGAAACCTTCAGCTTCTTTATCTGATTGGAAACAAGTTGACTAGTGATCCATCTTCTCCAGAGATTAGTTTCCTCTCTTCATTGACAAAGTGTAGACAATTGGAGAAAATTCTGATATCAATGAATCCTTTGAATGGAACACTTCCAAATTCTATTGGAAACTTGTCAAACTCTCTTCAAACATTTAATGTTTGGAGTTGTGATGTCAAGGGTGAAATTCCTTCACAAATTGGGAATTTAAAGAGCTTGTATGACATAAACCTGAATGATAATCAACTTATTGGACAGGTTCCTGGTACAATTGGCACTTTGCCTCTTCTCCAACGTTTGGATCTTTCAATGAACAAACTAAATGACTCAATCCCAAGTCAGATTTGTCAATTAAAAAGTTTGAATGAGTTGAGGCTTAGCAAAAATCAGATTTCTGGTTCAGTGCCAAGATGCATAGGGAATCTTACTTCTTTAAGAAATCTTTATTTGGATTCTAATAACCTCAACTCTTCAATACCTTCTTCCTTTTGGAGCCTCACTGATATCTTGGAGGTGAACTTTTCCTCTAATAGTTTTGGTGGGTCTTTGCCAAATGAGATAAGTGGCATGAATGCAGTGATAAAATTGGACATATCAAAGAATCACCTTTCAGGAGAACTTCCAAATGAGATTGGATCCTTGCAAAAGATAATGAATCTCTCATTAGCAAATAATATGTTACAAGGGCCTATTCCTGATTCAGTTGGCAATATGCTAAGCTTGGAATTTTTGGACCTTTCTCATAATCTTTTATCAGGAATCATCCCAAAGTCAATTGAGAAACTTTTTTATCTCAAATTTATCAACTTGTCTTATAATAAACTACAAGGAGAAATCCCTTCTGGTGGCAATTTTGCAAACTTCACAGCTCAATCATTCATGATGAATGATGCACTTTGTGGAAGACCTGAACTAGGAGTCCAACCATGTCCCATTAATGGTACAAAACAGAGAAAAACAGGGAAAAAACTTCTATTGAAATTGATCATACCCTTGATTATTGTGTCTTGCATCTTTGTTGGTTGTGCAATTCTTCTAATATACAAGAGAAAATACAATAAAGCTAGTTCAATTGATGATATAAACTTACCAACATTGCAATTTCCAAGTAGAATTTCTTACCATGAACTTGTTGAGGCAACAAAAAATTTTGATGAGCATAATCTTCTTGGTAAAGGGAGTTTTGGTTCTGTGTACAAAGGTGAGCTTTCTTCAAATGCAATGGTGATTGCAGTTAAAGTATTCAATTTGGAAGTGCAAGAAGGGTCAAGGAGTTTTGATATGGAATGTGAAGCAATGCGCAATCTTCGCCATCGCAATCTAGTTAAAGTCATTACTAGTTGTTCTAATGTTGTTGATTTCAAAGCCATAGTAATGGAATTTGTGCCAAATGGAAGCTTAGAGAAGTGGTTGTATTCTCATAACTATTTCCTGAGTTTTGTTCAAAGGTTGAACATAGCAATAGATATTGCATCTGCCTTGGAGTATCTCCATCATGGTAACTCAAAACCTGTGGTACATTGTGACTTGAAGCCGAGCAATGTTTTGTTGGATGAAAATATGGTAGCTCATGTTTGTGATTTTGGCATATCTAAACTCTTGGAAGAAGAGCAATCACAAATTCATACCAACACTTTGGCAACTCTTGGTTATATTGCACCAGAATATGGATCCAAAGGTGTTGTGTCCATAAAAGGAGATGTGTACAGCTATGGTATTATACTTATGGAAGTATTTACAAGAAAGAAGCCAACTGATGAAATGTTTGTAGAGGGATTAAGTTTAAGGTCATGGATCCAAGATTCAATGCCACATGAGATCATTCAAGTTTTAGACCATAATCTATTGGAGGGAGAGGAACAATTGATTTCTGCTATGGAAGCAGCTTTGTCAAATATCATTGTGTTGGCTTTAAATTGCTCTGCTAACACCCCTGATGAGAGAATGAGTATGGAGGAAGTCTTAAGTCGCTTAAACAAAATCAAAACTGTATTTTTGCAAATGGTAGAAGGAAATTTAAGTTAA 3678 0.363 MSIQSIDMEKTWFIFTFFLSIHHFMASSDTISNTNFTHVDQSALLAFKSHITFDPQHILANNWSTSSSICNWFGVTCDSNNGRVIGITLTNMNLNGTLPPHLGNLTFLVDLDLHNNSFYGILPKELVLLPGLKMVNLCTNKFGGEFPTWMGELSKLQNLSLCNNSFSDSIPSSLSNLSQLETLDLSFNFLHGNIPPELGRLQNLTVLDLAHNQLFNGIPSSIFNISTLQVINFEYNSFSGSISQNVGDLPQLRSINLSKNNLSGSIPWSLFNLSMLQEIQFIYNNISGTLPSDLCHGVPMLEKLDLSGNAFSGQIPSSLHQCKKLKYLKMISNRFYGQLPSEIGRLSMLQELDLSNNNLSGSLPPSLFNISSLRLINLRNNMFSGQLPEEMCQQAHSLQQISILNNRVGGTVPRSISNCTSLKRLFLGVNFFTGTIPNEIGDYLKNLEQLHLQGNRLRGSIPSNIFNISGLKSLSLSNNQLSGNLPIYAYYNLSSLQFLYLSANNLSGEIPSSLFNASMLLELVLANNTFTGVIPDSIGNLRNLQLLYLIGNKLTSDPSSPEISFLSSLTKCRQLEKILISMNPLNGTLPNSIGNLSNSLQTFNVWSCDVKGEIPSQIGNLKSLYDINLNDNQLIGQVPGTIGTLPLLQRLDLSMNKLNDSIPSQICQLKSLNELRLSKNQISGSVPRCIGNLTSLRNLYLDSNNLNSSIPSSFWSLTDILEVNFSSNSFGGSLPNEISGMNAVIKLDISKNHLSGELPNEIGSLQKIMNLSLANNMLQGPIPDSVGNMLSLEFLDLSHNLLSGIIPKSIEKLFYLKFINLSYNKLQGEIPSGGNFANFTAQSFMMNDALCGRPELGVQPCPINGTKQRKTGKKLLLKLIIPLIIVSCIFVGCAILLIYKRKYNKASSIDDINLPTLQFPSRISYHELVEATKNFDEHNLLGKGSFGSVYKGELSSNAMVIAVKVFNLEVQEGSRSFDMECEAMRNLRHRNLVKVITSCSNVVDFKAIVMEFVPNGSLEKWLYSHNYFLSFVQRLNIAIDIASALEYLHHGNSKPVVHCDLKPSNVLLDENMVAHVCDFGISKLLEEEQSQIHTNTLATLGYIAPEYGSKGVVSIKGDVYSYGIILMEVFTRKKPTDEMFVEGLSLRSWIQDSMPHEIIQVLDHNLLEGEEQLISAMEAALSNIIVLALNCSANTPDERMSMEEVLSRLNKIKTVFLQMVEGNLS. 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05446 1225 Pfam Protein tyrosine and serine/threonine kinase 939 1209 IPR001245 GO:0004672|GO:0006468
Seca10g05446 1225 ProSiteProfiles Leucine-rich repeat profile. 791 812 IPR001611 GO:0005515
Seca10g05446 1225 ProSitePatterns Protein kinases ATP-binding region signature. 941 964 IPR017441 GO:0005524
Seca10g05446 1225 Gene3D Ribonuclease Inhibitor 490 560 IPR032675 -
Seca10g05446 1225 FunFam Leucine-rich repeat receptor-like protein kinase 37 196 - -
Seca10g05446 1225 PRINTS Leucine-rich repeat signature 645 658 - -
Seca10g05446 1225 PRINTS Leucine-rich repeat signature 349 362 - -
Seca10g05446 1225 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1013 1221 - -
Seca10g05446 1225 SUPERFAMILY L domain-like 40 311 - -
Seca10g05446 1225 Gene3D Transferase(Phosphotransferase) domain 1 1013 1220 - -
Seca10g05446 1225 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 217 392 - -
Seca10g05446 1225 Gene3D Ribonuclease Inhibitor 561 870 IPR032675 -
Seca10g05446 1225 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1056 1068 IPR008271 GO:0004672|GO:0006468
Seca10g05446 1225 Gene3D Phosphorylase Kinase; domain 1 921 1012 - -
Seca10g05446 1225 ProSiteProfiles Protein kinase domain profile. 935 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05446 1225 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 492 1211 - -
Seca10g05446 1225 SUPERFAMILY RNI-like 218 556 - -
Seca10g05446 1225 SMART LRR_typ_2 177 200 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 153 176 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 789 812 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 444 468 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 493 517 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 249 273 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 346 370 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 693 717 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 541 566 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 201 225 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 645 669 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 298 322 IPR003591 -
Seca10g05446 1225 SMART LRR_typ_2 105 128 IPR003591 -
Seca10g05446 1225 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 568 864 - -
Seca10g05446 1225 ProSiteProfiles Leucine-rich repeat profile. 348 370 IPR001611 GO:0005515
Seca10g05446 1225 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515
Seca10g05446 1225 Pfam Leucine rich repeat 767 826 IPR001611 GO:0005515
Seca10g05446 1225 Pfam Leucine rich repeat 250 310 IPR001611 GO:0005515
Seca10g05446 1225 Pfam Leucine rich repeat 446 506 IPR001611 GO:0005515
Seca10g05446 1225 Pfam Leucine rich repeat 668 706 IPR001611 GO:0005515
Seca10g05446 1225 FunFam Serine-threonine protein kinase plant-type 916 1012 - -
Seca10g05446 1225 Gene3D Ribonuclease Inhibitor 37 193 IPR032675 -
Seca10g05446 1225 Gene3D Ribonuclease Inhibitor 297 393 IPR032675 -
Seca10g05446 1225 Gene3D Ribonuclease Inhibitor 194 296 IPR032675 -
Seca10g05446 1225 Gene3D Ribonuclease Inhibitor 394 489 IPR032675 -
Seca10g05446 1225 SMART LRR_sd22_2 346 372 - -
Seca10g05446 1225 SMART LRR_sd22_2 789 810 - -
Seca10g05446 1225 SMART LRR_sd22_2 669 695 - -
Seca10g05446 1225 SMART LRR_sd22_2 444 470 - -
Seca10g05446 1225 SMART LRR_sd22_2 201 227 - -
Seca10g05446 1225 SMART LRR_sd22_2 153 179 - -
Seca10g05446 1225 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 393 485 - -
Seca10g05446 1225 SUPERFAMILY RNI-like 490 832 - -
Seca10g05446 1225 SMART serkin_6 935 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05446 1225 SUPERFAMILY Protein kinase-like (PK-like) 915 1214 IPR011009 -
Seca10g05446 1225 Pfam Leucine Rich Repeat 349 367 IPR001611 GO:0005515
Seca10g05446 1225 Pfam Leucine rich repeat N-terminal domain 40 78 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05446 Seca-Chr10 123560679 123568632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05446 8 1213 Receptor kinase-like Gene Family AT5G46330 33.603 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca10g05446 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05446 - K13420 lja:Lj6g3v0938090.1 1213.75