Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05410 ATGAGCAAGAACTGGAAATTCAGCCGCTTCAGGGATCTTCGTGGAGTTCTGTGCCTTCTAGCGTTGTGTTTGTTCTTTCAGAGCTTTGGTTTGTGTTCCTCTCTTAACGAAGAAGGTAAAGCTCTTTTGAAGTTGAAGCAGCGAATAGTGAGTGATCCTTTTGGTGCTTTGTCAAATTGGGTTGATGATGAAGTAGCGGTTGACCCGTGTAATTGGTTTGGAATTGAGTGCTCAGATGGAAAAGTGGTTGTCTTGAATTTGAAAGACCTCTGTCTTGAAGGAAATCTGGCACCGGAGCTTGTGAACCTTGTTCACATAAAGTCTATAATTTTGCGGAATAATTCTTTTCAAGGGATCATCCCTGAAGGAATTGTACACTTGAATGAAGTGGAGGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCTCTTCCTAAAGATCTTGGGAGGAATATATCGCTGACAATCCTTTTGCTTGACAACAATGATCTTCTTTGTGGTTTCTCTCCTGAAATTAATGAATTGAAGATGCTTTCTGAATCTCAAGTAGATGAAAACCAGCTGATTAGTGCAGAAAAAATGCCACGTCGTATGGGAAGATCCACCACGCGGTATGTCATTAAGTGTTTGAAATGGATCATCTCTAGTCTACAGTTGCATGTTGGCCAAAATAAGAAAGGTCTTCGGAGGCTACTGCAAACTCTTAATCGTACTCGTGAAAATCCTTTAAATCGTGAAGCTAAGCTCCCAGATATTACTGCTCCATCTCCGTCCCCTTCCCCATCTGCCTCAGCAAGACCTCCAACAGTGACGAAGCCTCCATCCCCTGATCGAAATGATTCTGCCTCTCCTTCTCCCCTGCCTTCACCAGGCTCTACAACACAACCTAAAAGTAACTCATCAAAGAAACATCAAGTTTTGGCTGGAGTTGCGGGTGGTGCTGTATTTCTTCTCATTTCAATCATTGGCATATATCTTTATAGAACCAACAAGGTTTCTACTGTAAAACCATGGGCCACGGGATTAAGCGGACAGCTTCAAAAGGCATTTGTGACAGGTGTTCCAAAGCTAAAGAGATCAGAACTTGAAGCAGCATGTGAAGATTTTAGTAATGTTATTGGTACTACACCCATTGGGACAGTGTACAAAGGAACTTTATCTAATGGAGTTGAAATAGCTGTGGCCTCTGTTGCGGTGACATCATCCAAAGATTGGTCAAAGACTTCAGAAGCCCAGTTTCGGACGAAGATAGATACATTATCAAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGATATTGTGAAGAAGATGAGCCTTTCACCAGAATGGTTGTTTTCGAATATGCCCCAAACGGAACACTCTTTGAGCATTTACACATAAAAGAAGCTGAGCACTTGGATTGGGGAACAAGACTTAGAATTGCCATGGGCATGGCTTACTGCCTGCAACATATGCACCAATTGGACCCTCCTTTGGCCCATAGCAACCTGAATTCTTCATCTGTCCAACTCACTGATGATTATGCTGCCAAAATTTCAGATTTGGGTTTTTGGAATGAAATAGCTTCATCTGAGATAGTAAAAGCTGCTGCTAGAAAACACACTGACATGACATTAGCAAGTAACATTTACTGCTTTGGTGTTATGTTATTTGAAATGGTAACAGGCCGTCTCCCTTATTCAGTGGATAATAATGGCTCACTTGAAGACTGGGCTTCACACTATTTACAAGGGGACAAGCCCCTCAAAGAAATGGTGGATCCAACTCTAGCGTCCTTCCAAGAAGAACAGCTAGAACAAGTTGCTCCTTTGATTCAATCTTGTGTTCACCCTGATCAAGAGAAGAGACCAACAATGAAAGAAGTTTGTGAGAGATTAAGAGGGATAACAAAAATAAGTCCTGAAGCAGCTGTTCCAAAACTTTCTCCTCTTTGGTGGGCAGAGCTTGAGATTTCTTCTGTAGATGCAAGCTGA 1977 0.4188 MSKNWKFSRFRDLRGVLCLLALCLFFQSFGLCSSLNEEGKALLKLKQRIVSDPFGALSNWVDDEVAVDPCNWFGIECSDGKVVVLNLKDLCLEGNLAPELVNLVHIKSIILRNNSFQGIIPEGIVHLNEVEVLDLGYNNFSGPLPKDLGRNISLTILLLDNNDLLCGFSPEINELKMLSESQVDENQLISAEKMPRRMGRSTTRYVIKCLKWIISSLQLHVGQNKKGLRRLLQTLNRTRENPLNREAKLPDITAPSPSPSPSASARPPTVTKPPSPDRNDSASPSPLPSPGSTTQPKSNSSKKHQVLAGVAGGAVFLLISIIGIYLYRTNKVSTVKPWATGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTTPIGTVYKGTLSNGVEIAVASVAVTSSKDWSKTSEAQFRTKIDTLSKVNHKNFVNLLGYCEEDEPFTRMVVFEYAPNGTLFEHLHIKEAEHLDWGTRLRIAMGMAYCLQHMHQLDPPLAHSNLNSSSVQLTDDYAAKISDLGFWNEIASSEIVKAAARKHTDMTLASNIYCFGVMLFEMVTGRLPYSVDNNGSLEDWASHYLQGDKPLKEMVDPTLASFQEEQLEQVAPLIQSCVHPDQEKRPTMKEVCERLRGITKISPEAAVPKLSPLWWAELEISSVDAS. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05410 658 FunFam Inactive receptor-like serine/threonine-protein kinase 341 449 - -
Seca10g05410 658 Gene3D Phosphorylase Kinase; domain 1 339 449 - -
Seca10g05410 658 MobiDBLite consensus disorder prediction 284 304 - -
Seca10g05410 658 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Seca10g05410 658 MobiDBLite consensus disorder prediction 254 283 - -
Seca10g05410 658 ProSiteProfiles Protein kinase domain profile. 367 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05410 658 FunFam Nuclear pore complex protein NUP107 35 193 - -
Seca10g05410 658 SUPERFAMILY L domain-like 38 191 - -
Seca10g05410 658 Pfam Protein tyrosine and serine/threonine kinase 370 627 IPR001245 GO:0004672|GO:0006468
Seca10g05410 658 Gene3D Transferase(Phosphotransferase) domain 1 450 639 - -
Seca10g05410 658 PANTHER PROTEIN MALE DISCOVERER 2 16 655 - -
Seca10g05410 658 SUPERFAMILY Protein kinase-like (PK-like) 350 627 IPR011009 -
Seca10g05410 658 MobiDBLite consensus disorder prediction 239 304 - -
Seca10g05410 658 Pfam Leucine rich repeat N-terminal domain 36 78 IPR013210 -
Seca10g05410 658 Gene3D Ribonuclease Inhibitor 34 235 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05410 Seca-Chr10 122975470 122979693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05410 14 629 Receptor kinase-like Gene Family AT5G16000 26.708 1.52e-49 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca10g05410 PK_Tyr_Ser-Thr 1.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05410 - - gmx:100784541 976.081