Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05402 ATGGCTGCGTCGCTGCAGAAAGTGGCGCATTCAAATACTAACGCCGGCAGCTACGGCGACACCTGCAAGGGTGCTGCTTCTGCCGCTGCCGTCTCCGCTGAATTCCCGGTTGGTCTTAGGGTTCTCGTCGTCGATGATGACGTCACCACCTTGAAGATTATCGAGCAAATGTCTATTCGCTGCCATTACCGCGTTACCACATGCACTGGGGCTACTGTTGCTTTGAATATTCTACGGGAGAGGAAAGGCTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGCTGACGGTAGAACAAGTGCTGTCATGAAGGGAATTAGACACGGGGCTTGTGATTATTTGATTAAACCCGTGCGTGAGGAAGAACTAAGGAATATATGGCAGCATGTTGTTAGGAAAAATTGGAATGCAAATAAAGAACATGAAAATTCTGGCAGTATGGAAGATAATGATCGGAATAAACGGGGGAATGATGATACTGAGCATACTTCTTCTGCTGTTGATGCAACAGAAGGAATAGCTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGAAGATGCTGAATTAGAGAATGATGATCCAGCTACATCCAAGAAGCCCCGTGTAGTGTGGTCAGTGGAACTGCATCAACAATTTGTTAGTGCTGTGAATCAACTAGGGCTTGACAAGGCTGTGCCAAAGAGAATACTTGAATTGATGAATGTGCCTGGTTTGACAAGAGAAAATGTTGCAAGTCATTTGCAGAAATTCAGACTTTATCTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGTTAAACACAGTTCCTGGGAATATAGAATCTAAGCTGGGTGCTACTGGAAGATTTGACATACAAACATTGGCTGCTTCTGGCCATGTTCCCCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCGCCCAGTAACTAACATAATGCCCACAGTGGACCAGACTACCCTACTGCAAGCATCCATACAGGGGCCAAAAAATTCTCATGCTGATGATCATGCTGTAGCATATGGTCAGCCTCTTGTGAAAGGTCCTTCCAACATTGCCAAAAATTTCCCTCAGCCCATCTTAACTGCCAATGATACATCTTCAGGACATGGAGCATGGCCATCATCTAATACCATTAGTTCAGTGGGAACTAATAGTAATGTTGGAAGGTTGGGTGTTCAGAATAATAACACACTGATGGATATATTGCAGCACCAACAGAACCAGAAAAAACAACAGCAACAGCTACAGCTACAGCTGCAGCAGCAGTCACTGCTGATGCATGATCAAACTCGTACGATCAATGTTCAACCATCTTGCTTGGTTGTTCCCTCCCAAGCTTCTGACACTATGCAGGCGGTAAATAGTGTTGCTTCTGCCAACCAGGATCGCAGTTATGTTAGGAGTACCGTTATTGATTATAGTCTATTGCCACAAAAATCAAATAATTCCTTGAGTGTATCTCAATTTCCTGTTGGGGACACCAAAACTAGAGGCGGTCTCTGTGGGTATACGACACCCTCCATTTCCCCTCAAACGTCCTCTAGTTCAATAGGTTCCTCTAACAGCAACATTCAGCAGCTTCAGAACACAGCTATGACATTTGGTGCTGCAAGACCTTTGCCTGGACTCATGACTGATAGACAAGTTCCCTACGGTATTAAATCTATTGATTCACTTGATCAAGTATGTCCGAGGAATCTTGGATTTGTTGACAAAGGTACCTGCATTCCAAGTAGGTTTATGGAAAATGAAATTGAATCATCTGTAAGTGATTTTAGTCAAATGAAAGTATCCACAGATAGCAATGGTATCGCACTGATGGAGGAGCCAAATTTTAAAAATAATTCAAAAGTGATCCACCCTGTCCTACAAAGATATTCATCTCATGATCGTTCAAGTGTGTTCACTGAATAG 2007 0.4345 MAASLQKVAHSNTNAGSYGDTCKGAASAAAVSAEFPVGLRVLVVDDDVTTLKIIEQMSIRCHYRVTTCTGATVALNILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKNWNANKEHENSGSMEDNDRNKRGNDDTEHTSSAVDATEGIAKAPKKRSSLKEEEDAELENDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNTVPGNIESKLGATGRFDIQTLAASGHVPPETLAALHAELLGRPVTNIMPTVDQTTLLQASIQGPKNSHADDHAVAYGQPLVKGPSNIAKNFPQPILTANDTSSGHGAWPSSNTISSVGTNSNVGRLGVQNNNTLMDILQHQQNQKKQQQQLQLQLQQQSLLMHDQTRTINVQPSCLVVPSQASDTMQAVNSVASANQDRSYVRSTVIDYSLLPQKSNNSLSVSQFPVGDTKTRGGLCGYTTPSISPQTSSSSIGSSNSNIQQLQNTAMTFGAARPLPGLMTDRQVPYGIKSIDSLDQVCPRNLGFVDKGTCIPSRFMENEIESSVSDFSQMKVSTDSNGIALMEEPNFKNNSKVIHPVLQRYSSHDRSSVFTE. 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05402 668 MobiDBLite consensus disorder prediction 395 421 - -
Seca10g05402 668 FunFam Two-component response regulator 39 176 - -
Seca10g05402 668 MobiDBLite consensus disorder prediction 197 211 - -
Seca10g05402 668 MobiDBLite consensus disorder prediction 162 189 - -
Seca10g05402 668 FunFam Two-component response regulator 221 284 - -
Seca10g05402 668 MobiDBLite consensus disorder prediction 162 223 - -
Seca10g05402 668 Pfam Response regulator receiver domain 41 150 IPR001789 GO:0000160
Seca10g05402 668 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 281 IPR017930 -
Seca10g05402 668 Coils Coil 433 453 - -
Seca10g05402 668 ProSiteProfiles Response regulatory domain profile. 40 155 IPR001789 GO:0000160
Seca10g05402 668 SMART REC_2 39 151 IPR001789 GO:0000160
Seca10g05402 668 SUPERFAMILY CheY-like 38 161 IPR011006 -
Seca10g05402 668 Pfam Myb-like DNA-binding domain 227 275 IPR001005 -
Seca10g05402 668 Gene3D - 221 284 - -
Seca10g05402 668 PANTHER TWO-COMPONENT RESPONSE REGULATOR 39 436 IPR045279 GO:0009736
Seca10g05402 668 Gene3D - 39 176 - -
Seca10g05402 668 CDD REC_typeB_ARR-like 41 155 - -
Seca10g05402 668 NCBIfam myb-like DNA-binding domain, SHAQKYF class 225 278 IPR006447 GO:0003677
Seca10g05402 668 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05402 Seca-Chr10 122801805 122807444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05402 73 338 Response Regulator Gene Family AT3G16857 54.064 1.06e-93 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca10g05402 Response_reg 5.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05402 - K14491 gmx:100817125 908.672