Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g05397 | ATGGATATTACTATTATATATGGGTTCCACTCTGGCTCGTGGAAGACACAAGCTTGGTGGCCTGAGCGTGCTCACTCTCTCTCTCTGCAAAGAAATTTTGGACGAGTCGAGATTGGGGCCTTCCTTGGCAGACCTCACCGGAATATGAAGATGGATCACCGGAAACCACAAGACTCATCAAAAACTTCATCTGCTGCTGCAGATTCAGCACGGCAACCCGTCACCGTCACCCCTAACCGCTCCTGTCGCAAAGAAACTGCCAGGGAGAGGGATGAGGTGGAAGCTCAGGATCCAACTGCCGCACGAAAAGTTCAGAAAGCGGACCGCGAGAAACTCAGGAGGGATCGACTCAATGACCATTTTCACGAGCTGGGAAACGCGTTAGATCCTGATAGACCAAGGAATGACAAGGCAACTATTCTTACTGATGCAATCCAAATGCTAAAGGATTTCACTGAAGAAGTTAATAAGCTGAAAATGGAACATAAAGCACTTTCTGAAGAGTCTCGTGAACTAATGCAAGAAAAGAATGAACTCCGAGAAGAGAAGGCATCTTTAAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATGGACTGCAGTTGACCATTCTGTTGTCATGAGTCCACCTTATTCATATCCAGTTCCTATACCCATCCCTCCCAGTCCAATTTCCATGCACCCATCTCTTCAACCCTTTCCTTTCTTTGGAAATCAAAACCCTGGTCACATTCCTAGTCCCTGTTCAATGTATGTCTCATTCTCAGCTCCAACTAACCCTGCAATTGAGCTGCCATCATCTCAGTATGCTTCTACGTCTCACGCGTCTAACCAGAAAGAGTCCCGAAGCAAGTCACCGGATCATAGAAGGCCTAGTGATGCTGAAAGATGTAGTGATTCTCACGATGTAGCTACAGAGCTTGAACTTAAGATGCCTGGATCATCAGCACAACAGGATTCCACTTCTGGTGGAAGGAAGGACAAGCATTCAGCTATGAAGGATAGAATCATCACAGATGGGAGTGCTTCAAGCCGGTATTCATCACCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACACTAACATCCCAAAGGCTGATAATTGA | 1137 | 0.4609 | MDITIIYGFHSGSWKTQAWWPERAHSLSLQRNFGRVEIGAFLGRPHRNMKMDHRKPQDSSKTSSAAADSARQPVTVTPNRSCRKETARERDEVEAQDPTAARKVQKADREKLRRDRLNDHFHELGNALDPDRPRNDKATILTDAIQMLKDFTEEVNKLKMEHKALSEESRELMQEKNELREEKASLKSDIENLNAQYQQRVRIMFPWTAVDHSVVMSPPYSYPVPIPIPPSPISMHPSLQPFPFFGNQNPGHIPSPCSMYVSFSAPTNPAIELPSSQYASTSHASNQKESRSKSPDHRRPSDAERCSDSHDVATELELKMPGSSAQQDSTSGGRKDKHSAMKDRIITDGSASSRYSSPQGLQDSSNSVGDTNIPKADN. | 379 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g05397 | 378 | Gene3D | - | 99 | 174 | IPR036638 | GO:0046983 | |
Seca10g05397 | 378 | MobiDBLite | consensus disorder prediction | 272 | 378 | - | - | |
Seca10g05397 | 378 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 100 | 171 | IPR036638 | GO:0046983 | |
Seca10g05397 | 378 | Coils | Coil | 141 | 196 | - | - | |
Seca10g05397 | 378 | SMART | finulus | 107 | 157 | IPR011598 | GO:0046983 | |
Seca10g05397 | 378 | MobiDBLite | consensus disorder prediction | 289 | 315 | - | - | |
Seca10g05397 | 378 | MobiDBLite | consensus disorder prediction | 349 | 378 | - | - | |
Seca10g05397 | 378 | MobiDBLite | consensus disorder prediction | 272 | 288 | - | - | |
Seca10g05397 | 378 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 59 | 370 | IPR044579 | GO:0003700|GO:0006879 | |
Seca10g05397 | 378 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 101 | 151 | IPR011598 | GO:0046983 | |
Seca10g05397 | 378 | CDD | bHLH_AtILR3_like | 106 | 180 | - | - | |
Seca10g05397 | 378 | MobiDBLite | consensus disorder prediction | 60 | 81 | - | - | |
Seca10g05397 | 378 | MobiDBLite | consensus disorder prediction | 82 | 117 | - | - | |
Seca10g05397 | 378 | Pfam | Helix-loop-helix DNA-binding domain | 102 | 150 | IPR011598 | GO:0046983 | |
Seca10g05397 | 378 | MobiDBLite | consensus disorder prediction | 44 | 117 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g05397 | Seca-Chr10 | 122691690 | 122695292 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g05397 | 92 | 337 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G19860 | 54.183 | 1.02e-78 | 243 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Seca10g05397 | HLH | 3.1e-09 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g05397 | - | - | gmx:100818281 | 423.705 |