Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05397 ATGGATATTACTATTATATATGGGTTCCACTCTGGCTCGTGGAAGACACAAGCTTGGTGGCCTGAGCGTGCTCACTCTCTCTCTCTGCAAAGAAATTTTGGACGAGTCGAGATTGGGGCCTTCCTTGGCAGACCTCACCGGAATATGAAGATGGATCACCGGAAACCACAAGACTCATCAAAAACTTCATCTGCTGCTGCAGATTCAGCACGGCAACCCGTCACCGTCACCCCTAACCGCTCCTGTCGCAAAGAAACTGCCAGGGAGAGGGATGAGGTGGAAGCTCAGGATCCAACTGCCGCACGAAAAGTTCAGAAAGCGGACCGCGAGAAACTCAGGAGGGATCGACTCAATGACCATTTTCACGAGCTGGGAAACGCGTTAGATCCTGATAGACCAAGGAATGACAAGGCAACTATTCTTACTGATGCAATCCAAATGCTAAAGGATTTCACTGAAGAAGTTAATAAGCTGAAAATGGAACATAAAGCACTTTCTGAAGAGTCTCGTGAACTAATGCAAGAAAAGAATGAACTCCGAGAAGAGAAGGCATCTTTAAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTCAGAATCATGTTCCCATGGACTGCAGTTGACCATTCTGTTGTCATGAGTCCACCTTATTCATATCCAGTTCCTATACCCATCCCTCCCAGTCCAATTTCCATGCACCCATCTCTTCAACCCTTTCCTTTCTTTGGAAATCAAAACCCTGGTCACATTCCTAGTCCCTGTTCAATGTATGTCTCATTCTCAGCTCCAACTAACCCTGCAATTGAGCTGCCATCATCTCAGTATGCTTCTACGTCTCACGCGTCTAACCAGAAAGAGTCCCGAAGCAAGTCACCGGATCATAGAAGGCCTAGTGATGCTGAAAGATGTAGTGATTCTCACGATGTAGCTACAGAGCTTGAACTTAAGATGCCTGGATCATCAGCACAACAGGATTCCACTTCTGGTGGAAGGAAGGACAAGCATTCAGCTATGAAGGATAGAATCATCACAGATGGGAGTGCTTCAAGCCGGTATTCATCACCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACACTAACATCCCAAAGGCTGATAATTGA 1137 0.4609 MDITIIYGFHSGSWKTQAWWPERAHSLSLQRNFGRVEIGAFLGRPHRNMKMDHRKPQDSSKTSSAAADSARQPVTVTPNRSCRKETARERDEVEAQDPTAARKVQKADREKLRRDRLNDHFHELGNALDPDRPRNDKATILTDAIQMLKDFTEEVNKLKMEHKALSEESRELMQEKNELREEKASLKSDIENLNAQYQQRVRIMFPWTAVDHSVVMSPPYSYPVPIPIPPSPISMHPSLQPFPFFGNQNPGHIPSPCSMYVSFSAPTNPAIELPSSQYASTSHASNQKESRSKSPDHRRPSDAERCSDSHDVATELELKMPGSSAQQDSTSGGRKDKHSAMKDRIITDGSASSRYSSPQGLQDSSNSVGDTNIPKADN. 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05397 378 Gene3D - 99 174 IPR036638 GO:0046983
Seca10g05397 378 MobiDBLite consensus disorder prediction 272 378 - -
Seca10g05397 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 171 IPR036638 GO:0046983
Seca10g05397 378 Coils Coil 141 196 - -
Seca10g05397 378 SMART finulus 107 157 IPR011598 GO:0046983
Seca10g05397 378 MobiDBLite consensus disorder prediction 289 315 - -
Seca10g05397 378 MobiDBLite consensus disorder prediction 349 378 - -
Seca10g05397 378 MobiDBLite consensus disorder prediction 272 288 - -
Seca10g05397 378 PANTHER TRANSCRIPTION FACTOR BHLH121 59 370 IPR044579 GO:0003700|GO:0006879
Seca10g05397 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 151 IPR011598 GO:0046983
Seca10g05397 378 CDD bHLH_AtILR3_like 106 180 - -
Seca10g05397 378 MobiDBLite consensus disorder prediction 60 81 - -
Seca10g05397 378 MobiDBLite consensus disorder prediction 82 117 - -
Seca10g05397 378 Pfam Helix-loop-helix DNA-binding domain 102 150 IPR011598 GO:0046983
Seca10g05397 378 MobiDBLite consensus disorder prediction 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05397 Seca-Chr10 122691690 122695292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05397 92 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 54.183 1.02e-78 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g05397 HLH 3.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05397 - - gmx:100818281 423.705