Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05383 ATGGCCCTCTCTTTCTCTTTCACCACCCACACCCATTTCTTCTTCTTCTTCTTCTTGTTCTTCCTCTGCAACCTTCAACCTTCACTTGCTCAACAACTCAAATCCTTCAACATCTCACTCTCTCCATGGCTCCCTTCACAGAACAGAACCCTTATCTCCCCCAATTCCAATTTCACTGCTGGCTTCCTTCCCATGCCCAATTCCCCAAACAACTTCACCTTCTCTGTTTGGTTCTCCAAAGTCCCCAAAAATGCAAACCCTGTTGTATGGAACGCCACCACAACCTCTTCCCAAACCCAATTCATCATCACCTCAAAAGGGGAGCTTTTTCTCCATGGCTCCCCCATCGGTGTCAATGCTTCTGCCTCTTCCAATTCCACACAACTCCGCCTTCTTGACAATGGAAACTTAGTCTTGGGAACTTGGAGCAGCTTTGCAGATCCAACCAACACCATCTTGCCCAACCAAAGCATCAGTGGGATCATCCTTCGTTCTAATAATAGGAAATTCAAGTTTGTTAAGTCTCAGTGTTTGGCTCTCCAAGAGAATTCCACTTGTGACTCTGATGACAAGTACTATAACACCCCAAATGCTTTATTGAGCATGGACAATGATGGGAAAATGAGCATGGTAGGTAACTCTTTTCTTACCTCTGATTATGGTGACCCCAGGTTCAGAAAATTGGTTCTTGATGATGATGGGAATCTCAGAATCTACAGCTTCTACCCTGAGCAGCAGAATCAGTGGGTTGAGGTTTGGACAGCAATTTGGGATCTTTGCACAATCAAAGGAAAATGTGGTCCTTATGCTATCTGTGTGCCAAGAGAAGATTTGTATAATGTAACTGATTGTTTTTGCCCATCTGGGTTCAAGCCACTTCCAGGTGGGGCTGAGAAAGGTTGCACAAGAAAGATTCAACTTTCAAGCAACATTGATTTCCTCAGGCTAGACTATGTAAACTACACCAGCAATGGTGTGCTGAATCCAATCAATGCTGGGAATTTCACAACTTGTGAATCCAGCTGTAGAAAAGACCCAAAATGTCTTGGGTTTGGCTTCAAGTATGATGGATCAGGCTATTGTGTTTTGCTACCAGGAACACAGCTTCAATATGGTCACTGGTCACCAGGAACTGAAACTGCCTTCTTTCTGAGAGTTGACAAATCTGAAACAGAACCCCCCAATTTCATTGGGTTGACCCAAGTGATGCAAACAACATGCCCTGTTAACATAAGTCTTCCACTTCCACCTAAGGACTCAAACACCACCACCAGAAACATTGTCATAATATGCACCCTTTTTGCTGCAGAACTCATAGCTGGGGTGGCTTTCTTCTGGTCTTTCCTCAAGAGGTACATCAAGTACAGAGACATGGCTACCACATTAGGCCTTGAGCTTTTACCTGCTGGTGGCCCCAAAAGGTTCACATACTCAGAGATCAAAGCTGCTACCAATGACTTTTCCAACCTCATAGGGAAAGGTGGCTTTGGAGATGTCTACAAAGGGGAGTTGCCTGACCACCGTGTGGTTGCCGTGAAGTGCCTCAAGGATGTCACCGGCGGTGATGCTGAGTTTTGGGCAGAGGTCACTATCATTGCCAGGATGCACCATCTCAACTTGGTTCGTTTGTGGGGTTTCTGTGCTGAGAAAGGTAAAAGGATACTTGTCTATGAGTACATCCCTGGTGGCTCATTGGACAAGTATTTGTTCCGGGCCAAGTCTTCAAAGCCCAACTCAAACACAAACCCAAGCCCAAGCCCAAACACCCAAGATAAGCCCATTTTGGATTGGAGCATGAGGTACAGGATTGGACTTGGTGTGGCCCGGGCTATTGCATACTTGCATGAGGAGTGTTTGGAATGGGTTCTGCATTGTGATATAAAGCCTGAGAACATTCTGTTAGGTGATGATTTTTGTCCCAAGATATCAGATTTTGGGTTGGCAAAACTGAGGAAAAAGGAGGATATGGTGACTATGTCTAGGAGGAGAGGAACTCCTGGTTATATGGCTCCTGAATGGATCACTGCAGATCCAATAACTTCTAAGGCTGATGTGTATAGTTTTGGGATGGTACTATTGGAGCTTGTGAGTGGGGTGAGGAACTTTGAGGTCCAAAGTTCTGAGGTAAGAAGTGAGGAGTGGTATTTCCCAGGATGGGCTTTTGATAAGATGTTTAAGGAGATGAATGTGGATGACATTTTGGATAGTAAGATTAGGGAAGTTTATGATAGTAGGGCACATTTTGAATTGGTTAATAGAATGGTGAAGACAGCAATGTGGTGCCTGCAGGATAGGCCTGAGATGAGGCCTACAATGGGAAAGGTGGCTAAGATGTTGGAAGGGACTGTGGAGATCATTGAGCCCAAGAAGCCCACTGTTTTCTTCCTTGAAGGAGAGTAA 2400 0.4504 MALSFSFTTHTHFFFFFFLFFLCNLQPSLAQQLKSFNISLSPWLPSQNRTLISPNSNFTAGFLPMPNSPNNFTFSVWFSKVPKNANPVVWNATTTSSQTQFIITSKGELFLHGSPIGVNASASSNSTQLRLLDNGNLVLGTWSSFADPTNTILPNQSISGIILRSNNRKFKFVKSQCLALQENSTCDSDDKYYNTPNALLSMDNDGKMSMVGNSFLTSDYGDPRFRKLVLDDDGNLRIYSFYPEQQNQWVEVWTAIWDLCTIKGKCGPYAICVPREDLYNVTDCFCPSGFKPLPGGAEKGCTRKIQLSSNIDFLRLDYVNYTSNGVLNPINAGNFTTCESSCRKDPKCLGFGFKYDGSGYCVLLPGTQLQYGHWSPGTETAFFLRVDKSETEPPNFIGLTQVMQTTCPVNISLPLPPKDSNTTTRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKDVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGKRILVYEYIPGGSLDKYLFRAKSSKPNSNTNPSPSPNTQDKPILDWSMRYRIGLGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEVQSSEVRSEEWYFPGWAFDKMFKEMNVDDILDSKIREVYDSRAHFELVNRMVKTAMWCLQDRPEMRPTMGKVAKMLEGTVEIIEPKKPTVFFLEGE. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05383 799 Gene3D Transferase(Phosphotransferase) domain 1 560 790 - -
Seca10g05383 799 SMART serkin_6 485 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05383 799 Gene3D - 42 153 IPR036426 -
Seca10g05383 799 MobiDBLite consensus disorder prediction 574 593 - -
Seca10g05383 799 FunFam S-receptor-like serine/threonine-protein kinase 457 559 - -
Seca10g05383 799 Pfam S-locus glycoprotein domain 222 292 IPR000858 GO:0048544
Seca10g05383 799 Gene3D Phosphorylase Kinase; domain 1 459 559 - -
Seca10g05383 799 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 158 IPR036426 -
Seca10g05383 799 ProSiteProfiles PAN/Apple domain profile. 301 387 IPR003609 -
Seca10g05383 799 ProSiteProfiles Protein kinase domain profile. 485 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05383 799 SUPERFAMILY Protein kinase-like (PK-like) 468 780 IPR011009 -
Seca10g05383 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Seca10g05383 799 FunFam Serine/threonine-protein kinase 560 790 - -
Seca10g05383 799 PIRSF SRK 6 799 IPR024171 GO:0004674
Seca10g05383 799 PANTHER OS07G0415500 PROTEIN 11 794 - -
Seca10g05383 799 SMART blect_4 46 148 IPR001480 -
Seca10g05383 799 CDD STKc_IRAK 491 781 - -
Seca10g05383 799 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524
Seca10g05383 799 Pfam Protein kinase domain 489 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05383 Seca-Chr10 122370333 122372780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05383 319 791 Receptor kinase-like Gene Family AT4G18250 33.809 5.34e-78 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca10g05383 Pkinase 6.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05383 - - gmx:100775518 1235.71