Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05382 ATGGAGAAACCCCAACTGGTTTTCCTTGTTCTGTTGTTTTCTGTGATGTTTCTGAGTGCATGGTCTCAGGATGATGTTGTGATGGAGGCGCTGAAGAAGGCGATCATCATCCCTCCACAGAGTGGTCTCAAATGGTCAGGCCCAGATGTGTGTCAATGGAGTAAGGTTCAGTGCAATTCAGAGAAGAGGGTCACTGCTATTCAAATTGGAGAACATAACCTTCAAGGCTCTCTGCCTAAAGAACTTGTGCAGCTCTCTGAGTTAAAGCGTTTTGAGTGCATGAAAAATAATCTCTCTGGCCCTTTCCCTTACATGCCAAAGACATTGGAGAGATTGATTATTCATGACAACAATTTCAGCTCCATACCCAGTGATTTCTTCACCAGCATGACCAATTTGCAAGAGGTGAGGATTGACTATAACCCTTTCCCTCCGTGGCAGGTTCCTGTTAGCCTCAAGGACTCTGTGTCTCTTCAGAATTTCTCTGCCATGAACGCTGGTTTTGTTGGGGAAATCCCTGATTTTTTTGGAAAAGATGGTCCTTTCCCAGGATTGATGTTCTTGGGTTTGTGTTTTAATTCTTTTGAAGGTGGGTTGCCTGCAAGCTTTTCTGGGAGTTCTATAGTGTATCTTTTGGTGAATGGTCAGAAAAGTAACTCTAAACTCAATGGTACCCTTGATGTGTTACAGAACATGACATCCCTCCAACAAATTTGGGTACATGGTAATTCATTCACGGGTCCTATACCTGACTTGTCAAACCATGATCAATTGTTTGATGTGAGTTTGAGGGATAACCACTTGACTGGTGTTGTTCCACCCTCTCTCACTGCTCTTCCTGCTCTGCAGGTTGTGAACTTGACCAACAATTGTCTTCAAGGATCCCCTCCCAAGTTCAAAGATGGGGTCAGGGTTGATAATGATATGGAAAGGGGGATCAATAGATTTTGCACAAAGGTGGTTGGTCAGCCATGTAGTCCCCTTGTAAATGCTTTGTTGTCTGTTGTTGAACCTTGGGGTTATCCTCTAAAACTTGCTGATAGTTGGCAGGGTAATGACCCTTGTAAAGATTGGATGGGGATTGTTTGCTCTGGTGGTAACATTTCCATTATTAACTTACAGAACATGGGTCTCTCTGGCAATATTTCTCCTGGTTTTGCAAGCCTTACATCTGTGACAAAGATGATTCTTGCTAACAATGGTCTCACTGGTACTATCCCAAGAGAACTTACTAGTATGCCTCTTTTGAAAGAGCTTGATGTTTCGAATAATAAGTTATATGGTCAGGTACCTTCTTTCCGTGAAGGTGTGGTTGTTAAAACTGGTGGGAATCCTGATATTGGAAAGGATAAACCTCAAGCACCGCCTGGCTCGAATCCTGGAGGTAATACTAATGATAAGAAACATAATGCTGGAGCCATTGTTGGCATTGTGGTGGGGGCTGCCTGTTTACTTGGTGTAGGGGTTCTGGTATTTGTTATGTATGGTAGAAAACATAAGCGTGCTAGAAAAGTTCAAAGTCCAAATGCAATTGTGGTACATCCTCATCATTCTGGAGATGGAAATGGTTTGAAGATAAGTGTTGCTGCTGTTGCAGGAGCTGCTGGAGCTGGTGGTGGTGGAGGTGGAGGAACTAGTACTGGTGCATTTAGCCCAACAAGCAGTGTTCAAACTGTGGAAGCTGGTAACATGGTAATTTCAATTCAGGTTTTGAGGGAAGTTACAAACAATTTCAGTGAAGAAAACATATTGGGGAAGGGTGGTTTCGGCACCGTATATAAAGGAGAATTGGATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATCTGGAATGGTGGGTGAGAAGGGGCTGAGTGAGTTCATGTCTGAAATTGCTGTACTTACTAAGGTTCGACACAGGCATTTGGTTGCATTGTTGGGCCATTGCTTGGATGGAAATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAGGGGACTCTTAGTAAACATTTGTTCAATTGGAAAGAAGAAGGGTTACAACCACTGGAATGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCCCAACAAATTTTTATCCACAGGGATCTTAAGCCATCAAACATCTTGCTTGGAGATGATATGCGTGCTAAAGTATCAGATTTTGGATTGGTTCGGCTTGCTCCAGAAGGACAAGTCTCATTTGAGACTAGACTTGCAGGAACTTTTGGATATCTGGCACCAGAATATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTCTATAGCTATGGAGTGATTCTTATGGAGATGATAACAGGAAAGAAAGCAATTGACAATAGCCAATCAGAAGAGAACATCCACCTTGTTACATGGTTCCGAAGGATGCTACTAAACAAAGATTCATTCAGAAAGGTAATTGACCCAACAATGGATGTTGATGAGGAAGCCTTAGAGAGTTTAAGGACAGTTGCTGAGTTGGCTGGCCATTGTAGTGCAAAGGAGCCCTATCAGCGTCCTGATATGGGTCATGTGGTGAATGTGTTAGCACCACTTGTTGAGATCTGGAAGCCTGCAGAACCTGATGCTGATGATATTTATGGGATTGACTTGGACATGACATTGCCTCAAGCTCTCACCAAGTGGCAGGCTTTTGAAGGAAGGAGCACCATTGATCTCTCATCATCTTCTTCATCAATCCTAACAAGTGGAGATAATACACAGTCAAGCATTCCAACTCGGCCTTCTGGATTTGCAGCTTCCTTTACTTCTTCTGATGGAAGATGA 2802 0.4315 MEKPQLVFLVLLFSVMFLSAWSQDDVVMEALKKAIIIPPQSGLKWSGPDVCQWSKVQCNSEKRVTAIQIGEHNLQGSLPKELVQLSELKRFECMKNNLSGPFPYMPKTLERLIIHDNNFSSIPSDFFTSMTNLQEVRIDYNPFPPWQVPVSLKDSVSLQNFSAMNAGFVGEIPDFFGKDGPFPGLMFLGLCFNSFEGGLPASFSGSSIVYLLVNGQKSNSKLNGTLDVLQNMTSLQQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNHLTGVVPPSLTALPALQVVNLTNNCLQGSPPKFKDGVRVDNDMERGINRFCTKVVGQPCSPLVNALLSVVEPWGYPLKLADSWQGNDPCKDWMGIVCSGGNISIINLQNMGLSGNISPGFASLTSVTKMILANNGLTGTIPRELTSMPLLKELDVSNNKLYGQVPSFREGVVVKTGGNPDIGKDKPQAPPGSNPGGNTNDKKHNAGAIVGIVVGAACLLGVGVLVFVMYGRKHKRARKVQSPNAIVVHPHHSGDGNGLKISVAAVAGAAGAGGGGGGGTSTGAFSPTSSVQTVEAGNMVISIQVLREVTNNFSEENILGKGGFGTVYKGELDDGTKIAVKRMESGMVGEKGLSEFMSEIAVLTKVRHRHLVALLGHCLDGNERLLVYEYMPQGTLSKHLFNWKEEGLQPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQVSFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGKKAIDNSQSEENIHLVTWFRRMLLNKDSFRKVIDPTMDVDEEALESLRTVAELAGHCSAKEPYQRPDMGHVVNVLAPLVEIWKPAEPDADDIYGIDLDMTLPQALTKWQAFEGRSTIDLSSSSSSILTSGDNTQSSIPTRPSGFAASFTSSDGR. 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05382 933 SUPERFAMILY L domain-like 34 299 - -
Seca10g05382 933 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Seca10g05382 933 FunFam Leucine-rich repeat receptor-like kinase 327 450 - -
Seca10g05382 933 Pfam Protein tyrosine and serine/threonine kinase 581 853 IPR001245 GO:0004672|GO:0006468
Seca10g05382 933 FunFam receptor protein kinase TMK1 656 873 - -
Seca10g05382 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Seca10g05382 933 Gene3D Ribonuclease Inhibitor 328 451 IPR032675 -
Seca10g05382 933 FunFam receptor protein kinase TMK1 542 655 - -
Seca10g05382 933 Gene3D Ribonuclease Inhibitor 22 323 IPR032675 -
Seca10g05382 933 MobiDBLite consensus disorder prediction 441 467 - -
Seca10g05382 933 CDD STKc_IRAK 584 857 - -
Seca10g05382 933 SMART serkin_6 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05382 933 Gene3D Transferase(Phosphotransferase) domain 1 656 867 - -
Seca10g05382 933 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05382 933 SUPERFAMILY L domain-like 332 433 - -
Seca10g05382 933 PANTHER OSJNBA0070M12.3 PROTEIN 8 933 - -
Seca10g05382 933 MobiDBLite consensus disorder prediction 899 933 - -
Seca10g05382 933 Gene3D Phosphorylase Kinase; domain 1 546 655 - -
Seca10g05382 933 SUPERFAMILY Protein kinase-like (PK-like) 554 854 IPR011009 -
Seca10g05382 933 FunFam Receptor-like kinase TMK4 22 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05382 Seca-Chr10 122351925 122355453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05382 64 860 Receptor kinase-like Gene Family AT5G07280 30.529 1.10e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca10g05382 Pkinase 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05382 K00924 - gmx:100776064 1388.63