Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05381 ATGTCTTTTCCTTGGTCTTTCTTTACATGTCTCTTCCTAATTGTGTGTTTAAGAGTAGAGTTAGCAAATTCTCAGATTTATCGAAAAGTGGGACATAAACTATTCCCTTACTATACCATTACCGTTGATCCATCTGGGCATGGAAACTTTACTACCATTCAGTCTGCAATTGATTCAGTTCCTCCAAACAACAAATATTGGGTTTCCATCAATGTGGTGGCAGGCATATACAGGGAAAAGTTGGTGATTCCTAATGACAAGCCTTACATTATACTGCGAGGACAAGGAGAGAAGGAAACTATTGTTGATTGGGATGATCATGAAAATACCTCAGAGAGCCCTACCTTCACATCCATGGCAAACAATATTGTTGTCAAGTCTATTAGCTTTAGGAATACATACAATATTGGAAAAAATAACCTGATAAAACCTGCAGTAGCTGCAATGGTAAGCGGTGACAAGTCATACTTCATTAATGTTGGATTCTTTGGTGTGCAAGACACTTTGTGGGATTGTCAAGGAAGACATTACTATAAGTCTTGTACCATCCAAGGTGCTGTTGATTTCATCTTTGGTGCTGCCCAGTCTTTATTTGAGGGGTGTTCCATATCTGTTGTTGGTGGTGCTCTTCCTCCTGGATGGCCAGGATATATCACAGCATGTGGAACGTAA 672 0.3973 MSFPWSFFTCLFLIVCLRVELANSQIYRKVGHKLFPYYTITVDPSGHGNFTTIQSAIDSVPPNNKYWVSINVVAGIYREKLVIPNDKPYIILRGQGEKETIVDWDDHENTSESPTFTSMANNIVVKSISFRNTYNIGKNNLIKPAVAAMVSGDKSYFINVGFFGVQDTLWDCQGRHYYKSCTIQGAVDFIFGAAQSLFEGCSISVVGGALPPGWPGYITACGT. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05381 223 Gene3D - 22 223 IPR012334 -
Seca10g05381 223 SUPERFAMILY Pectin lyase-like 36 222 IPR011050 -
Seca10g05381 223 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 37 220 - -
Seca10g05381 223 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Seca10g05381 223 Pfam Pectinesterase 40 205 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05381 Seca-Chr10 122337819 122339817 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05381 2 222 Carbohydrate Esterase AT2G19150 44.737 1.84e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05381 - - gmx:100819252 319.316