Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05376 ATGATGTTTCTAATTCGTTTGTGGTGCTTTGCATGTCTCTTATTTGTTTTAGTGGGGTTGAGATTAGAAGTAGCAAATGCTCAGTTTTACAGGAAAGTTGGAAATAAAGTCCTTCCTTACTGGACAATATTTGTGGATCCATCAGGGCATGGAAACTTCTCTACCATTCAATCTGCCATTGATTCAGTTCCTTCCAACAACAAGTATTGGGTTTCCATCAAGGTCAAGGCAGGAACCTACAGAGAAAAAGTGAACATTCCTGTTGATAAGCCTTATATCATACTAAAAGGAGAGGGAAAGAGAAGAACTCTTGTTGAATGGGATGACCATGATACAACCTCAGAGAGCCCTACCTTCTCAATCATGGCAGATAATATTGTTGTCAAAAGCATGAGCTTTAGGAATTCATACAACAATCCAATAAATAATAAACCGAAGGTGCCTGCAGTGGCTGCAATGGTAAGTGGTGACAAGTCCTATTTTTTCAGAGTTGGTTTCTTTGGTTTGCAAGACACTTTGTGGGATGACAGAGGAAGACATTACTACAAGCTTTGTACCATACAAGGTGCTATTGATTTTATCTTTGGTGCTGGCCAATCTTTGTTTGAGAGGTGTTCCATATCTGTTATTGGTGGTGCCTTAGATCCAGGCCTTCCTGGTTTTATCACAGCACAAGGGAGAGTAAACCCAAAGGATTCAAGTGGGTTTGTTTTCAAGGATTGCCATGTGTTTGGAAATGGTACAACTTACTTGGGAAGGCCTTGGAGAGGGTACTCTAGAGTCCTCTTTTACAAGACCAACATGTCCCACATTGTTCAACCTACTGGTTGGGATGCATGGAATTTCCTTGGACATGAGGATCGCATAACATTTGCAGAGTATGGGAATTTTGGGGGTGGTGCTGACACATCCAAGAGAGTGAGTTGGACTAAGAAGTTGGATTTAACAACAGTTAATATGATGGCAAGTCTGAACTTCATTGACACACAAGAATGGCTTCAGAACCAACTCTTGTAA 1017 0.409 MMFLIRLWCFACLLFVLVGLRLEVANAQFYRKVGNKVLPYWTIFVDPSGHGNFSTIQSAIDSVPSNNKYWVSIKVKAGTYREKVNIPVDKPYIILKGEGKRRTLVEWDDHDTTSESPTFSIMADNIVVKSMSFRNSYNNPINNKPKVPAVAAMVSGDKSYFFRVGFFGLQDTLWDDRGRHYYKLCTIQGAIDFIFGAGQSLFERCSISVIGGALDPGLPGFITAQGRVNPKDSSGFVFKDCHVFGNGTTYLGRPWRGYSRVLFYKTNMSHIVQPTGWDAWNFLGHEDRITFAEYGNFGGGADTSKRVSWTKKLDLTTVNMMASLNFIDTQEWLQNQLL. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05376 338 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 39 334 - -
Seca10g05376 338 Gene3D - 40 338 IPR012334 -
Seca10g05376 338 Pfam Pectinesterase 44 327 IPR000070 GO:0030599|GO:0042545
Seca10g05376 338 SUPERFAMILY Pectin lyase-like 40 334 IPR011050 -
Seca10g05376 338 ProSitePatterns Pectinesterase signature 2. 187 196 IPR033131 -
Seca10g05376 338 FunFam Pectinesterase 39 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05376 Seca-Chr10 122251046 122254602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05376 5 286 Carbohydrate Esterase AT2G19150 44.170 3.62e-80 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05376 - - gmx:100819252 548.51