Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05352 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAACAGGATAAAGCATTTGAAAATGCCTTGGCAACTTATCCAGAAGATGCTTCAGATCGATGGGAGAAGATTGCAGCTGATGTACCAGGGAAGACTATAGAAGAAATTAAACAGCATTATGAGCTCTTGGTTGATGATGTTAACCAGATCGAATCTGGTTGTGTGCCTCTACCATCGTATAATTCTTCTTCAGAGGGAAGCCATGCTAGTGATGAAGGAGCTGGCAAGAAGGATCAGGAAAGGCGAAAGGGTATTGCTTGGACAGAGGAGGAACACAGGTTGTTTCTTCTGGGATTGGACAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACTAGAACACCAACACAAGTAGCAAGCCATGCCCAGAAATACTTCATTCGTCTGAACTCAATGAACAAAGATAGAAGGCGATCTAGCATACATGATATCACCAGTGTTAACAATGGAGACATTTCAGCACCTCAAGGACCAATAACAGGACAAACCAATGGCTCTCCTGCAAATTCTGCTAGCAAATCAGGCAAACAAGCCCCTCCAGCCTCAACAGGTGCAGGAATATATGCTGCTCCCACCATAGGACAACCTATAGGAGGACCCCTTGTATCTGCTGTTGGCACCCCAGTGAATCTCCCTGCTCCTGCACACATGGCATATGATTCTGCTAGCAATTCAGGCAAACAAGCCTCTCGAGTCTCAACAGGGTTACCAAGTGCAGGAATATATGTTGCTCCCACCATAGGACAACCTATAGGAGGACCCCTTCTATCTGTTGTTGGCACCCCAGTGAATCTCCCTACTCCTGCACACATGGCATATGGTGTCAGAGCCCCAGTTCCTAGTGCAGTTGTTCCTGGTGCACCAGTGAACATGGCCCCTATGACATACCCTATGTCACATACATCTGCTCCTCATAGGTAA 978 0.4652 MTVDEVDSSSEWSREQDKAFENALATYPEDASDRWEKIAADVPGKTIEEIKQHYELLVDDVNQIESGCVPLPSYNSSSEGSHASDEGAGKKDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQTNGSPANSASKSGKQAPPASTGAGIYAAPTIGQPIGGPLVSAVGTPVNLPAPAHMAYDSASNSGKQASRVSTGLPSAGIYVAPTIGQPIGGPLLSVVGTPVNLPTPAHMAYGVRAPVPSAVVPGAPVNMAPMTYPMSHTSAPHR. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05352 325 MobiDBLite consensus disorder prediction 162 198 - -
Seca10g05352 325 PANTHER TRANSCRIPTION FACTOR KUA1 8 268 - -
Seca10g05352 325 CDD SANT 11 58 IPR001005 -
Seca10g05352 325 MobiDBLite consensus disorder prediction 69 83 - -
Seca10g05352 325 ProSiteProfiles SANT domain profile. 101 149 IPR017884 -
Seca10g05352 325 SMART sant 97 147 IPR001005 -
Seca10g05352 325 SMART sant 8 60 IPR001005 -
Seca10g05352 325 FunFam Transcription factor SRM1 4 71 - -
Seca10g05352 325 MobiDBLite consensus disorder prediction 69 97 - -
Seca10g05352 325 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 147 IPR006447 GO:0003677
Seca10g05352 325 ProSiteProfiles Myb-like domain profile. 93 145 IPR001005 -
Seca10g05352 325 MobiDBLite consensus disorder prediction 156 202 - -
Seca10g05352 325 Gene3D - 5 71 - -
Seca10g05352 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 149 IPR017930 -
Seca10g05352 325 Gene3D - 99 151 - -
Seca10g05352 325 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Seca10g05352 325 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Seca10g05352 325 FunFam transcription factor MYB1R1 99 150 - -
Seca10g05352 325 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Seca10g05352 325 Pfam Myb-like DNA-binding domain 100 145 IPR001005 -
Seca10g05352 325 CDD SANT 100 145 IPR001005 -
Seca10g05352 325 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Seca10g05352 325 SUPERFAMILY Homeodomain-like 95 150 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05352 Seca-Chr10 121918168 121927536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g05352 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05352 - - ccaj:109792793 459.144