Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05345 ATGTCTTCTTCCTCAAGTGCTTCATCGTCAAACACCACAGATCCTGAATGGATGTACGACGTTTACTTAAGCTTCACAAAGGAAGACGTTGCAGTGAAAAGTTTAATTTTGTCTCTGAAGGAACAATTAGATAAGAGAAGAATCCGAACTTACTTGGACGACTTTCGAACTCCGCTGTTCTCATTGCTCCAAGCAATTGAACAGTCTCGGGTTTCTATCGTTGTTTTCTCGGAACAGTACGGTGGTTCTAGTTCGTGTCTGCAGCAGCTGGAAAAGATGATGGAGTGTCACAGAGCCAAGGGTCAGGTGGTTTTTCCGGTGTTCTTTGATGTAGACATATGGGAGGTTCGCAAGCAAAGGGACGATGAGGCTGCTGTGGATTGTGGCTCTTTTAGTATGATTGGGAATGTTTTTGGCACTATTCACGTACTGCTGGATAGTAAATATTTGTCCGGCCCATACTATCCAGTTGGGATAGATGTTTGTGCGAAAGATGTGTATCAAAATTTGAGTTATAATTTAGAAAGAGTTCACTTGATTGGAATATGGGGAGAAGGAGGAATCGGTAAAACATCCATTGCCAAAGTCATTTACAACAACATGTGTCACAAATTTGAAGGTTCGACTTTCTTTGCAAATATTAAAGATGTATGGAATCTGCAGGAAAAAGGCAAAGATTATCTACAAAAGCAACTTCTTTCTGACATCAATAAACGAGCACTTGTAGTACTTGATGATGTGAGTGAATCAGACCAATTGAAATCATTATGTGGAAGTCGTGAATGGTTTAGTCCTGGGAGTATAATACTGATTACAACTACAGAAAAGCATTTACTTGATCCCCTTGACTTGGACATTGAATATGAAATGAAGAAAATGGACTCAAGTAGATCACTTGAGCTTTTTAGTTGGCATGCATTCAGGCATTCTAGTCCTACAAAAAAATTGTTAGAACTCTCTAAAATAGCAGTTTCTTACTGTGGAGGAATGCCATTGGCTCTGGAAGTGCTGGGCTCGTTGTTACTTGACAGAACAACATCAGAGTGGGAGAATATAATGAAGCTACTTGAAAACAATCAAAGTAGTAATGCGGTGCAAAATATTCTGAAAATGAGTTATGATTTTCTCGATGATAATGAGAGAAAGATATTCCTTGAAATAGCTTGCTTCTATATCGGAAATGATAGGCACAACATTACACAGTTATTAAATGGCTATAAACTTGATGCAGAAATTGGGATAAGTAAACTCATTGAACGGAACCTGCTTAAGGTTGACAAGAATAACAAGCTTGAAATGCATGATTTGTTGCAAAAGATGGGAAGAGAAATGAACCATTTGAAGCCAAAATCCAAATGGATCCACAATGTGTTCTTGAGTTTCAGAGGTGAAGACACTAGGAGGTCTTTTACTTCTCATCTCTGTGCCGCTTTACAAAATGCTGATATTGAGGTTTACATGGATGACAAACTTGAAAGGGGAGGGAATATCTCATCCTCATTATTGCAAGCAATTGAAGGTTCAAGAATTTCTATCATCATTTTCTCAATAAACTATGCTAATTCTAGATGGTGCCTTCAAGAGCTGGAGAAAATCATGGAGTGTCATAAAACTATTGGTCAAGAAGTTGTACCTGTATTCTATGATGTGGAACCATCAGAAGTGCGTAGTCAAAACGGATCTTTTGGCAAAGAATTTGAAGGGCTTGTACGCACAATCTCTGCAACGAAAGATATGATTATTACTTGGAAAAGAGCACTCACACAGGCTGCAAACTTGTCTGGATGGAATTTAAATAATTACGGAACTGAAGTTGAGTTGATTGGTGATATTCTTAAAACTGTTACCACAAAACTAGACGATGGCAAATGCTTATTTGTTGCGGATCACCCTGTGGGAATGGAATCTCGTGTGCAGGACATGATTCAATTGTTAAGTGGTGAATCAAGTAATGGGGTTTGTATAATAGGAATTTTGGGAATGGGCGGTTGTGGTAAAACAACCACTGCCAAAGCCATTTACAATGAAATAAATCAAAACTTTGAAGGTAAATGTTTCCTTGCAAATATAAGGGAGGTTTGGGATCAAGATAATGGAAAAGTTTATTTGCAAGAACAACTTCTTTTAGGCATCTTGAAAACTAGAAGGATGAAAATACACAACATTGATTTGGGAAGAAATGTAATAAAGGAAAGTCTTTGCCAAAAAAGGGTACTTGTTGTACTTGATGATATAAACAACTTAGAGCAACTAAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTGAAGGAAGCAGGATAATCATCACAACTAGAGATGAGCATTTACTGAATGTCCTTCATGTGGACAATATATACAGAATGAAGGAAATGGATGAAACCGAATCTCTGGAGCTGTTTAGCTGGCATGCATTTAAGCAAGTTGCTCCTATAGCAGATTTCACTGAACTCTCTAGAAGGGTTGTTGCTTACTCTGGAAGACTACCACTAGCCCTTGAAGTTCTTGGCTCTTATTTGTTTGAAAGGGGAATTGCTGAGTGGGAAAGTGCTTTGTCAAAACTTGAAATGATTCCTAATGATCAAATACAGAAGAAATTGAAAATAAGCTATGATGGTTTAAGTGATGATATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGAGAGAAACTATGTCACACATATTTTAGATGGTTGTGGACTTCGTGCAGAAATTGGGATAATTGTCCTCATAGAGCGAAGCCTTTTAAAAGTTGACCAGAATAACAAGCTTGAAATGCATGATTTTCTGAAAGCCATGGGAAGAGAGATAATTCGCGATATGTCACCAGAGAACCCTGAGGAACGTAGTAGATTATGGTTTCATGAAGATGTGGTTGACATGATAACAAACAAGATTGCAACAATAGCTGTCAAAGGGCTGGCTTTTAGTTTACCAAAAAACAATGATGTTGTTTTTGAGACTAAATCATTTAAGAAGATGAAAAGACTTAGATTGCTTCAACTTGGCCATGTAAAACTTACTGGAGATTTTGAGTATTTATCAAAAGACCTGCGCTGGCTCTGCTGGCATGGATTTCCTTTAAGATACATGCCTGGGAACTTTCATCTGAACAGATTAGTTGCTATGGACTTAAAGCACAGCAACCTACAATTAGTCTGGAAGGAGCCACAGTTGCTTGATAGGTTAAAAATCCTCAATCTGAGTCATTCCCCTTACTTGACTCAAACCCCTGATTTTACAAGACTGCCAAATCTTGAAAAGCTAATCCTCAAGGATTGTCCACAATTGTCAAAGGTTCACTCAACAATTGGAGATCTCAAATTTCTTATTCTGGTAAATTTGAAGGATTGTAAATCCCTCTATCACCTCCCAAGAAGTATCTATAAGCTGAAATCTCTTGTTCTTTCCGGCTGTTTAAAAATTGACAAGTTGGAAGAGGACATCATGCAAATGGAATCTTTGACAAATCTAATGGCAGATAACACTGCTATCACTCAAGTACCTAATTCTCTAGTGATATTAAAAAGTATCAGATATGTGTCTCTGTGTGGCTATGAAGGATTTTCACGTCACGTATTTCCTTCAATGATTTTGTCTTTAATGTCACCATCAAGTAATCCTATGTATAAAGTTTTTGGGCACGTTAAATCTTCACTCCAAAGTCTTTCACTTGGTTTATCTGCAAAAAAGCATGCAAAATCAAAATCAAGACCAAGCACATCTCTGATAACATACCCAAAGACTTCCACAAAACCAAACACATCTCATATGACATATGCAGAGACTTCCACATTAATTGGTCTTCAGAACTCCATTCACATTGCAGGGTCTGGAAATTCCTCCAGATCTCTTGTTATTCACGCTGGAGAGTGCAACAAAGTCACTGATACTTTTACAAAGAGTATTTTACAGGAAAGTGATGATAAAAGGAAAAGATTTAAGTGA 3963 0.3755 MSSSSSASSSNTTDPEWMYDVYLSFTKEDVAVKSLILSLKEQLDKRRIRTYLDDFRTPLFSLLQAIEQSRVSIVVFSEQYGGSSSCLQQLEKMMECHRAKGQVVFPVFFDVDIWEVRKQRDDEAAVDCGSFSMIGNVFGTIHVLLDSKYLSGPYYPVGIDVCAKDVYQNLSYNLERVHLIGIWGEGGIGKTSIAKVIYNNMCHKFEGSTFFANIKDVWNLQEKGKDYLQKQLLSDINKRALVVLDDVSESDQLKSLCGSREWFSPGSIILITTTEKHLLDPLDLDIEYEMKKMDSSRSLELFSWHAFRHSSPTKKLLELSKIAVSYCGGMPLALEVLGSLLLDRTTSEWENIMKLLENNQSSNAVQNILKMSYDFLDDNERKIFLEIACFYIGNDRHNITQLLNGYKLDAEIGISKLIERNLLKVDKNNKLEMHDLLQKMGREMNHLKPKSKWIHNVFLSFRGEDTRRSFTSHLCAALQNADIEVYMDDKLERGGNISSSLLQAIEGSRISIIIFSINYANSRWCLQELEKIMECHKTIGQEVVPVFYDVEPSEVRSQNGSFGKEFEGLVRTISATKDMIITWKRALTQAANLSGWNLNNYGTEVELIGDILKTVTTKLDDGKCLFVADHPVGMESRVQDMIQLLSGESSNGVCIIGILGMGGCGKTTTAKAIYNEINQNFEGKCFLANIREVWDQDNGKVYLQEQLLLGILKTRRMKIHNIDLGRNVIKESLCQKRVLVVLDDINNLEQLNALCGSREWFGEGSRIIITTRDEHLLNVLHVDNIYRMKEMDETESLELFSWHAFKQVAPIADFTELSRRVVAYSGRLPLALEVLGSYLFERGIAEWESALSKLEMIPNDQIQKKLKISYDGLSDDMEKDIFLDICCFFIGKERNYVTHILDGCGLRAEIGIIVLIERSLLKVDQNNKLEMHDFLKAMGREIIRDMSPENPEERSRLWFHEDVVDMITNKIATIAVKGLAFSLPKNNDVVFETKSFKKMKRLRLLQLGHVKLTGDFEYLSKDLRWLCWHGFPLRYMPGNFHLNRLVAMDLKHSNLQLVWKEPQLLDRLKILNLSHSPYLTQTPDFTRLPNLEKLILKDCPQLSKVHSTIGDLKFLILVNLKDCKSLYHLPRSIYKLKSLVLSGCLKIDKLEEDIMQMESLTNLMADNTAITQVPNSLVILKSIRYVSLCGYEGFSRHVFPSMILSLMSPSSNPMYKVFGHVKSSLQSLSLGLSAKKHAKSKSRPSTSLITYPKTSTKPNTSHMTYAETSTLIGLQNSIHIAGSGNSSRSLVIHAGECNKVTDTFTKSILQESDDKRKRFK. 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05345 1320 FunFam Disease resistance protein (TIR-NBS-LRR class) 451 621 - -
Seca10g05345 1320 PRINTS Disease resistance protein signature 655 670 - -
Seca10g05345 1320 PRINTS Disease resistance protein signature 732 746 - -
Seca10g05345 1320 PRINTS Disease resistance protein signature 825 839 - -
Seca10g05345 1320 PRINTS Disease resistance protein signature 1063 1079 - -
Seca10g05345 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 385 IPR027417 -
Seca10g05345 1320 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 455 1164 IPR044974 GO:0006952
Seca10g05345 1320 SUPERFAMILY L domain-like 947 1231 - -
Seca10g05345 1320 Gene3D - 618 785 IPR027417 -
Seca10g05345 1320 ProSiteProfiles TIR domain profile. 17 170 IPR000157 GO:0007165
Seca10g05345 1320 Gene3D - 451 617 IPR035897 -
Seca10g05345 1320 Pfam TIR domain 19 120 IPR000157 GO:0007165
Seca10g05345 1320 Pfam TIR domain 455 619 IPR000157 GO:0007165
Seca10g05345 1320 SMART till_3 18 141 IPR000157 GO:0007165
Seca10g05345 1320 SMART till_3 454 593 IPR000157 GO:0007165
Seca10g05345 1320 Gene3D - 12 127 IPR035897 -
Seca10g05345 1320 SUPERFAMILY Toll/Interleukin receptor TIR domain 451 596 IPR035897 -
Seca10g05345 1320 Pfam NB-ARC domain 635 871 IPR002182 GO:0043531
Seca10g05345 1320 Pfam NB-ARC domain 166 374 IPR002182 GO:0043531
Seca10g05345 1320 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 120 IPR035897 -
Seca10g05345 1320 SUPERFAMILY "Winged helix" DNA-binding domain 364 445 IPR036390 -
Seca10g05345 1320 Gene3D Ribonuclease Inhibitor 979 1236 IPR032675 -
Seca10g05345 1320 Gene3D - 142 284 IPR027417 -
Seca10g05345 1320 SMART AAA_5 176 294 IPR003593 GO:0016887
Seca10g05345 1320 SMART AAA_5 652 792 IPR003593 GO:0016887
Seca10g05345 1320 ProSiteProfiles TIR domain profile. 453 619 IPR000157 GO:0007165
Seca10g05345 1320 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 885 IPR027417 -
Seca10g05345 1320 Gene3D - 790 874 IPR042197 -
Seca10g05345 1320 Gene3D - 293 377 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05345 Seca-Chr10 121804569 121814057 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05345 19 444 WRKY Transcription Factor Family AT4G12020 25.474 2.30e-34 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05345 - - lja:Lj0g3v0354289.1 1239.56