Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05344 ATGTGTGACAATTTTAATTTTGAGGGTTCCACTTTCCTTGCAAATATTAAACATGTGTGGAAGCAGGAAAAAGGCAAAGATTATCTACAAAAGCAACTTCTTCCTCACATCAATAAACGAGCACTTGTAGTGCTTGATGATGTGAGTGAATTAGACCAATTGAAATCATTATGTGGAAGGTTTGGTCCGGGGAGTATAATATTGATTACAACTACAGAGAAATATTTATTTGATCCCCTTGACTTGGACATTAAATATGAAATGAAGGAAATGGACGCAAGTAGATCACTTGAGCTTTTTAGTTGGCATGCATCCAGGCATTCTAGCCCTACAAAAAATTTATTAAAACTCTCAAGAAAAGCAATTTCTTACTGTGGAGGAATACCATTGGCTCTGGAAGTGCTGGGCTCGTTGTTACTTGACAGAACAACATCAGAGTGGGAGATTATAATGAAGCTATTTGAAAAAAATCGAAGTGGTAATGCAGTGCAAAATTTTCTTTTTTGGTTTGCAGGAGGGGCAAATCCCCCGGTGCAAAATATTATGAAATTGAGTTATGATTTTCTTGATGATAATGAGAAAAAGATATTCCTTGAAATAGCTTGCTTCTATATCGGAAAGGATAGACACAACATTACACAATTATTAAGTGGCTATAAACTTGATGCAGAAACTGGGATAAGTAAACTCATTGAACGAAGGCTGCTTAAGGTTGACAAGAATAACAAGCTTGAAATGCATGATTTGTTTCAAAAGATGGGAAGAGAAATGAACCATTTGAAGCCAAAATCCAAATGGATCCACAATGTGTTCTTGAGTTTTAGAGGTGAAGACACTCGTCGGTCTTTTACTTCTCATCTGTGTGCCACTTTACAAAATGCTGGTGTTGAGGTTTACAGGGACAAGAAACTTGAAAGGGGAGGGAATATATCATCCTCATTATTGCAAGCAATTGGAGGTTCTAGAATTTCTATCATCATTTTCTCAATAAACTATGCTAATTCTACATGGTGCCTTCAAGAGCTGGAGAAAATCATGGAGTGTCACAAAACTATTGGTCAAGAAGTTATACCTGTATTCTATGGTGTGGAACCATCAGAAGTGCGTCACCAAAATGGATCTTTTGGCAAAGAATTTAAAGGGCTTGTAAACAAAATCTCTGCGACGAAAGATATGGTTATTACTTGGAAAAAGCACTCACACAAGCTGCAAACTGGTCTGGATGGAATTCAAATAATTACAGGCGGTTCTGGTAAAACAACCACTGCCAAAGCCATTTACAATGAAATAAATCAAAACTTTGAAGGTAAATGTTTCCTTGCAAATATAAGGGAGGTTTGGGATCAAGACAATATATACAAAATGAAGGAAATGGATGAAAGCGAATCTCTGGAGCTGTTTAGCTGGCATGCATTTAGGCAAGTTGCTCCTATAACAGATTTCACTGAACTCTCTAGAAGGGTTATTGCTTACTCTGGAAGACTACCACTAGCCCTTGAAGTTCTTAGCTCTTATTTGTTTGCAAGGGGAATTGCTGAGTGGGAAAGTGCTTTGTCAAAACTTGAAATGATTCCCAATAATCAAATACAGAAGAAATTGAAAATAAGCTATGATGGTTTAAGTGATGATAAGGAGAAAAATATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGAGAGAAACTATGTCACACAGATTTTAGATGGTTGTGAACTTCATGCAGAAATTGGGATAACTATCCTAATAGAGCAAAACCTTTTAAAAGTTGACAAGAATAACAAGCTTGAAATGCATGATTTGCTGAAAGCCATGGGAAGAGAGATAATTCACGATATGTCACCAGAGAACCCTGAGGAACGTAGTAAATTATGGTTTCAAGGAGATGTGGTCGATGTGATAACAAAAAAGATTGACTGTAAATCCCTCTGTCACCTCCCAAGAAGTTTCTATAAGTTGAAATCCCCGAAATCTCTGGTTCTTTCTGGTTGTTTAAAACTTGACAAGTTGGAAGAGGACATCATGCAAATGGAATCTTTAACAAGTCTAATGGCAGATAACACTGCTATCACTCAAATGCCTAATTCTCTACTGATATAA 2100 0.3652 MCDNFNFEGSTFLANIKHVWKQEKGKDYLQKQLLPHINKRALVVLDDVSELDQLKSLCGRFGPGSIILITTTEKYLFDPLDLDIKYEMKEMDASRSLELFSWHASRHSSPTKNLLKLSRKAISYCGGIPLALEVLGSLLLDRTTSEWEIIMKLFEKNRSGNAVQNFLFWFAGGANPPVQNIMKLSYDFLDDNEKKIFLEIACFYIGKDRHNITQLLSGYKLDAETGISKLIERRLLKVDKNNKLEMHDLFQKMGREMNHLKPKSKWIHNVFLSFRGEDTRRSFTSHLCATLQNAGVEVYRDKKLERGGNISSSLLQAIGGSRISIIIFSINYANSTWCLQELEKIMECHKTIGQEVIPVFYGVEPSEVRHQNGSFGKEFKGLVNKISATKDMVITWKKHSHKLQTGLDGIQIITGGSGKTTTAKAIYNEINQNFEGKCFLANIREVWDQDNIYKMKEMDESESLELFSWHAFRQVAPITDFTELSRRVIAYSGRLPLALEVLSSYLFARGIAEWESALSKLEMIPNNQIQKKLKISYDGLSDDKEKNIFLDICCFFIGKERNYVTQILDGCELHAEIGITILIEQNLLKVDKNNKLEMHDLLKAMGREIIHDMSPENPEERSKLWFQGDVVDVITKKIDCKSLCHLPRSFYKLKSPKSLVLSGCLKLDKLEEDIMQMESLTSLMADNTAITQMPNSLLI. 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05344 699 Gene3D - 262 438 IPR035897 -
Seca10g05344 699 Gene3D - 91 171 IPR042197 -
Seca10g05344 699 Gene3D - 457 541 IPR042197 -
Seca10g05344 699 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 268 448 IPR044974 GO:0006952
Seca10g05344 699 SMART till_3 267 406 IPR000157 GO:0007165
Seca10g05344 699 FunFam Disease resistance protein (TIR-NBS-LRR class) 264 435 - -
Seca10g05344 699 Gene3D - 180 258 IPR036388 -
Seca10g05344 699 Gene3D - 10 82 IPR027417 -
Seca10g05344 699 Gene3D Ribonuclease Inhibitor 635 698 IPR032675 -
Seca10g05344 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 552 IPR027417 -
Seca10g05344 699 SUPERFAMILY Toll/Interleukin receptor TIR domain 264 382 IPR035897 -
Seca10g05344 699 PRINTS Disease resistance protein signature 35 49 - -
Seca10g05344 699 PRINTS Disease resistance protein signature 651 667 - -
Seca10g05344 699 PRINTS Disease resistance protein signature 125 139 - -
Seca10g05344 699 Pfam NB-ARC domain 25 160 IPR002182 GO:0043531
Seca10g05344 699 Pfam TIR domain 268 400 IPR000157 GO:0007165
Seca10g05344 699 SUPERFAMILY "Winged helix" DNA-binding domain 178 258 IPR036390 -
Seca10g05344 699 SUPERFAMILY "Winged helix" DNA-binding domain 528 634 IPR036390 -
Seca10g05344 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 198 IPR027417 -
Seca10g05344 699 ProSiteProfiles TIR domain profile. 266 403 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05344 Seca-Chr10 121786341 121790141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05344 450 625 WRKY Transcription Factor Family AT5G45050 37.288 3.13e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05344 - - lja:Lj0g3v0353669.1 519.62