Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05337 ATGTTTTCTCATAAACGGGCACTTGTAGTACTTGATGATGTGAGTGATTCAGATCAACTGATATCATTATGTGGAAGTTGTGAATGGTTTGGTGATGGGAGTATAATATTGATTACAACTAGAGAGAAGAATTTACTTGATCTCTTTGAACTTCAGTATAAATATGAAATGAAGGAAATGGACACAAGTAAATCACTTGAGCTTTTTAGTTGGCATGCGTTTAAGCATTTTAGTCCTGCTGATAACTTGATTAAACTCTCAAGAAAAGCAATTTCCTACTGTGGAGGACTACCACTGGCTCTTGAAGTTTTGGGCTCGTTGTTACTTGACAGAACAACATCAGAGTGGAAAAGTGTATTGAAGCTACTTAGAAATCAAAGTAAGGAGGTGATAGGTATACTAAAAATGAGCTATGATTTTCTAGATGATGATGAGAAAAAAATATTCATTGAAATAGCTTGTTACTACATCGGAATGGATAGACACAGAATTACACAACTATTAAATGGTTGTGGACTTGCTGCAGAAACGGGGATAAGTAAACTCATTGAACGGAGCCTTCTAAAGGTTGACAAGAATAACAAGCTTGAAATGCATGATTTGTTGCAAAATATGGGAAGAGAAATGAACCATTTGAAGTCAAAATCCAAATGGATCTACGATGTGTTCTTCAGTTTCAGAGGTGCAGACACTCGGAGGTCTTTTACTTCTCATCTCTGTGCCGCTTTACAAAATACCGGTATTGAGGTTTACATGGATGACAAACTTGAAAGGGAGCTGGAGAAAATCATGGAGTGTCATAGAACTATTGGTCAAGAAGTTGTACCTGTATTCTATGGTGTGGAACCGTCTGAAGTGCGTCACCAAATCGGATCTTTCGGAGAAGAATTTAAAGGACTTGTACACAGAATCTCAGCTACTGAAGATATGATTATCAGTTGGAAAAGAGCACTTAGTGAAGCTGCAAACTTGTCTGGATGGACTTTAAATAATTACAGAACTGAAAATGAGTTGATTGATGACATTCTTAAAACTGTTACCACAAAACTAGACAATGGTTCATACTTATTTGTTGCTAATCACCCAGTGGGAGTTGAATCTCGTGTGCAGGATATAATTCAATTGTTAAGTGGTAAATCGAATGAGGTTCGCATGGTAGGAATATTGGGAATGGGAGGATGTGGTAAAACTACCATTGCTAAAGCCGTTTACAATAAAATTAATCAAAACTTTGAAGGTAAAGGTTTCCTTGCAAATATAAGGGAGGTTTGGGACCAAGATGGTGGCAAAGTCTATTTGCAAGAACAACTTCTTTCAGGCATCTTGAAAACAAGAAGGATGAAATTGAATGACATTGAATTGGGAAGGACTATAATAAAGGAAAGCCTTTGCCAAAAAAGAGCACTTGTTGTATTTGATGATATAAATAATTTGGACCAACTAAATGCTTTGTGTGGAAGTCGTCGATGGTTTGGTCAAGGAAGTAGGTTAATCATCACAACTAGAGATGAGCACTTACTGAATGTTCTCAAAGTGGACAGTATATACAGAATGAAAGAAATGGATGAAAATGAATCTCTAGAGCTTTTTTGTTGGCATGCATTTAAGCAAGCTGCTCCAACAACAGATTTTGTTGAACTCTCTAGAAGGGTTGTTGCTTACTCTGGAAGACTGCCACTAGCCCTTGAAGTTCTTGGCTCTTATTTGTTTGAAAGGGAAATTACTGAGTGGGAAAGTGCATTGTCGAAACTTGAAGTTATTCCCAATGATCAAATACAGAAGAAATTGAAAATAAGCTATGATGGTTTAAGTGATGATATGGAAAAAGATATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGAGAGAAACTATGTTACACAGATTTTAGATGGCTGTGGACTTCATGCAGAAATTGGGATAACTGTCCTCATAGAGCGAAACCTTGTAAAAGTTGGCAAGAATAACAAGCTTGAAATGCATGAATTGCTAAAAGTCATGGGAAGAGAGATAATTCGTGAGACATCACCTAAGAATCCTGAGGAGCGTAGCAGATTATGGTTTCATGATGATGTGCTTGATGTGATGACAAACAACATTGCAACAATAGCTGTCAAGGGACTGGCTTTTAGTTTACCAAAAACAAATGATGTTGTTTTTGAGACTAAAGCATTTATGATGATGAAGAGACTCAGATTACTTCAATTTGATAATGTAAAACTTACTGGAGATTTTCAGTATGTATCAAAAGACTTGCGCTGGCTCTATTGGCATGGATTTCCTTTAAAATACATTCCTGGGAACTTCTATATGAAAAAATTAGTTGCTATGGACTTAAAGAACAACAAACTACAATTAGTCTGGAAGGAGCCGCAGTCGCTTGATAGGCTGAAAGTCCTCAACCTGAGTCATTCCCATTACTTGACACGAACCCCTGACTTTTCAGGACTACCAAATCTTGAAAAGCTAATCCTCAAAGATTGTCCGCAATTGTCAAAGGTTCACTCAACAATTGGAGATCTCAAATATCTTATTTTGGTAAATTTAAAGGACTGTAAATCCCTCAGTCACCTCCCAAGAAGTTTCTATAAGTTGAAATCTCTGAAATCTCTTGTTCTTTCCGGCTGTTCAAAAATTGACAAGTTGGAAGAAGACATCATGCAAATGGAATCCTTGACAAGTCTAATAGCATATAACACTGCTATTACACAAGTGCCCTCTTCTCTAGTAAGATTAAAAAATATCAAATATGTCTCTTTGTGCGACCATCAAGGATTATCACGTGATGTATTTCCTTCACTAATTTGGTCTTTTATGTCACCAAGAAATCTTATGTGTAAAGTTTTTGGGAGCTTTTCATCTTTACTTCCTAGTCTTTCACTTGGTTTATCTGCCAATAATCATGTAGAATTGGAATCAAGACCAAGCACTTCTCTGATAACATACACAGAGACCCCCACAAAACCAAGCACATCTCATATGACATATGCAGAGACTTCCACATTAATTGATCTTCAGAACACCATTCACATTGCAGGGACTGGAAATTCCTCCAGATCTCTTGTTATTCAAGCTGGAGAGTGCAACAAAGCCACTGATACTTTTACAAAGAATATTTTACAGGAATGGACTAGTGATGGATCTAGTGACTCTGAGTGCTCTTTTCCTGGTGACACGCGTTCTAAATGGCTAACCTTCAATGGCGATTCCGCATTAGTGTTTAAAGTGCCTAATAATGGTAGCAAGTTGAAAGGAATGACTCTGCGCATTATTTATTCATCTTCCCTTGTCAACCTGGCTCCTGAGTGTGTTCTTCTTAATGTGTTCAATTACACAAAGAACACCACTCTGTCCTACAAGCTAGACACAACAACTTCTCTTAAAGATGAAGAGTGGCAAGGATTGATGTCAAATCTTGAACCTGGTGATGAAGTGGAGATTGTTATAGTGTTGGGACATCGATTTACTGTGAAGAAGATAGTGGCCCATCTAATATATGATGAAATAACCAATCACAAAATTATGGAGTGTTAA 3537 0.3704 MFSHKRALVVLDDVSDSDQLISLCGSCEWFGDGSIILITTREKNLLDLFELQYKYEMKEMDTSKSLELFSWHAFKHFSPADNLIKLSRKAISYCGGLPLALEVLGSLLLDRTTSEWKSVLKLLRNQSKEVIGILKMSYDFLDDDEKKIFIEIACYYIGMDRHRITQLLNGCGLAAETGISKLIERSLLKVDKNNKLEMHDLLQNMGREMNHLKSKSKWIYDVFFSFRGADTRRSFTSHLCAALQNTGIEVYMDDKLERELEKIMECHRTIGQEVVPVFYGVEPSEVRHQIGSFGEEFKGLVHRISATEDMIISWKRALSEAANLSGWTLNNYRTENELIDDILKTVTTKLDNGSYLFVANHPVGVESRVQDIIQLLSGKSNEVRMVGILGMGGCGKTTIAKAVYNKINQNFEGKGFLANIREVWDQDGGKVYLQEQLLSGILKTRRMKLNDIELGRTIIKESLCQKRALVVFDDINNLDQLNALCGSRRWFGQGSRLIITTRDEHLLNVLKVDSIYRMKEMDENESLELFCWHAFKQAAPTTDFVELSRRVVAYSGRLPLALEVLGSYLFEREITEWESALSKLEVIPNDQIQKKLKISYDGLSDDMEKDIFLDICCFFIGKERNYVTQILDGCGLHAEIGITVLIERNLVKVGKNNKLEMHELLKVMGREIIRETSPKNPEERSRLWFHDDVLDVMTNNIATIAVKGLAFSLPKTNDVVFETKAFMMMKRLRLLQFDNVKLTGDFQYVSKDLRWLYWHGFPLKYIPGNFYMKKLVAMDLKNNKLQLVWKEPQSLDRLKVLNLSHSHYLTRTPDFSGLPNLEKLILKDCPQLSKVHSTIGDLKYLILVNLKDCKSLSHLPRSFYKLKSLKSLVLSGCSKIDKLEEDIMQMESLTSLIAYNTAITQVPSSLVRLKNIKYVSLCDHQGLSRDVFPSLIWSFMSPRNLMCKVFGSFSSLLPSLSLGLSANNHVELESRPSTSLITYTETPTKPSTSHMTYAETSTLIDLQNTIHIAGTGNSSRSLVIQAGECNKATDTFTKNILQEWTSDGSSDSECSFPGDTRSKWLTFNGDSALVFKVPNNGSKLKGMTLRIIYSSSLVNLAPECVLLNVFNYTKNTTLSYKLDTTTSLKDEEWQGLMSNLEPGDEVEIVIVLGHRFTVKKIVAHLIYDEITNHKIMEC. 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05337 1178 Gene3D - 520 604 IPR042197 -
Seca10g05337 1178 Gene3D - 60 142 IPR042197 -
Seca10g05337 1178 SUPERFAMILY "Winged helix" DNA-binding domain 129 214 IPR036390 -
Seca10g05337 1178 ProSiteProfiles TIR domain profile. 218 350 IPR000157 GO:0007165
Seca10g05337 1178 SMART till_3 219 324 IPR000157 GO:0007165
Seca10g05337 1178 Gene3D - 1 53 IPR027417 -
Seca10g05337 1178 FunFam Disease resistance protein (TIR-NBS-LRR class) 522 604 - -
Seca10g05337 1178 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 220 927 IPR044974 GO:0006952
Seca10g05337 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 615 IPR027417 -
Seca10g05337 1178 Pfam NB-ARC domain 366 600 IPR002182 GO:0043531
Seca10g05337 1178 Pfam NB-ARC domain 3 137 IPR002182 GO:0043531
Seca10g05337 1178 Gene3D - 214 257 IPR035897 -
Seca10g05337 1178 Gene3D - 348 515 IPR027417 -
Seca10g05337 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 150 IPR027417 -
Seca10g05337 1178 Gene3D Ribonuclease Inhibitor 699 983 IPR032675 -
Seca10g05337 1178 PRINTS Disease resistance protein signature 555 569 - -
Seca10g05337 1178 PRINTS Disease resistance protein signature 462 476 - -
Seca10g05337 1178 PRINTS Disease resistance protein signature 864 880 - -
Seca10g05337 1178 PRINTS Disease resistance protein signature 385 400 - -
Seca10g05337 1178 SUPERFAMILY L domain-like 674 973 - -
Seca10g05337 1178 SUPERFAMILY Toll/Interleukin receptor TIR domain 216 327 IPR035897 -
Seca10g05337 1178 Gene3D - 258 347 IPR035897 -
Seca10g05337 1178 Pfam TIR domain 255 351 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05337 Seca-Chr10 121703504 121711045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05337 220 913 WRKY Transcription Factor Family AT4G12020 30.109 2.48e-79 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05337 - - pcin:129288830 1223.76