Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05336 ATGTCTTCTTCCTCCAGTGCTTCATCGTCAAACACCACAGATCCTAAATGGATGCACGACTTTTTCATAAGCTTCACAGAGGAAGACGTTGCAGTGGAGCGGTTCATTGTTACTCTGAATGCACAATTAGGAATGATCGGAATTCGAGCTTGCTTCGACCACATCGACATGGTTCGAAACAAGCAGGAAACGTCACTACTCTCACAGCTGCAAGCAATTGAAGGCTCTCGAGTTTCTATCGTTGTTTTCTCCGAACACTACGGTGGTAATAGCTGGCATTTGCGGGAGCTGGGAAAAATCATGGAGTGTCACAGAGAAAAGGGTCAGGTGGTTTTTCCAGTATTCTATGGCGTGGACATGTGGGAAGTACGCAAGCAAAGGGGTAAGTTTGGACAAGTGTTTGAACAAATGATAAAGAGGTCGTTGGTGAAGGAAGACACCGCGTTGAGTTGGAGGAGAGCACTGGCGGATGCTGCTTTCTTTCCCGGTTGCTTCGTATCCCCTGAGCAATTGAGTGGTACCATTTTGGATAGTGCTTCTGATGCAATAAACGAGGTAGTTTTTCAAGGGAATTTTGTTGGCATTGTCCGTATGATGCTAGATAGTAAATATTTGTCCCGGCCACGCCATCCAGTTGGGATAGATGATCATGCGAAAAATATGTTTGAGAGCTTGAGTCACAATTTTGAAAAGGTTCACTTGGTAGGAATATGGGGAAAGGGAGGAATTGGTAAAACATCCATTGCCAAAGTCCTTTACAACAGTTTGTGTCATAATTTTGAGGCTTTGAGTTTCCTCATGAATATTAATGATGTATGGAAGCAGGATAACGGCAAAGATTATCTACAAAAACAACTTTTTTCTGACATCAATTTTCCAGCAGACATTTTAATACAAAGCACAGAAACGGAGAAAATATCTTCTCCTAGGCGGGCACTTGTAGTACTTGACGATGTGAGTCAAACAGACCAACTGATTTCATTATGTGGAAGTCGTGAATGGTTTGGTCTTGGGAGTATAATATTGATTACAACCAGAGAAAAGTATGTACTTGATCTCCTTGAAGTGGACATTGAATATGAAATGAAGGAAATGGACTCAATTAAATCACTTGAGCTTTTTAGTTGGCATTCGTTTAAGCATTTTAGCCCTACTGATAATTTGATTAAACGTTCTAGAAAAGCAATTTCTTACTGTAGAGGATTGCCACTAGCTCTTGAAGTTCTGGGCTCGTTGTTACTTGACAGAACATCATCAGAGTGGAGAAGTATATTGAAGCTACTGGAAAGAAATCAAAGTATGGGAGTGCCAAATATGCTAAAAGTGAGCTATGATTTTCTAGATGATAACGAGAAAAAAAAAACTGGGATCAGTAAACTCATTGAACGGAGCCTTCTAAAGGTTGACAAGAATAACAAGCTTGAAATGCATGACTTGTTGCGAGAAATGGGAAGAGAAATGAATCATTTTAAGCCAAAATCCAAATGGATCCACAATGTGTTCTTGAGTTTTAGAGGTGAAGACACTCGCCGGTCTTTTACTTCTCATCTTTGTTCTGCTTTACAAAATGCTGGTATTGAGGTTTACATGGATGAAAAACTTGGAAGGGGAGAAAATATATCATCCTCATTGTTGCAAGCAATTGAAGGTTCTAGAATTTCTATCATCATTTTCTCAATGAACTATGCAAATTCAAGTTGGTGCCTTCAAGAGCTGGAGAAAATAATGGACTGTCATAGAACTATTGGTCAAGAAGTTGTACCTGTATTTTATGGTGTGGAACCATCAGAAGTGCGTAACCAAATTGGATCTTTTGGAAAAGCATTGGAAGGACTTGTACAGAGAATCTCAGCAACGAAAGATATGATTATCAGTTGGAAAAGAGCACTTACTGAAGCTGCAAACTTGTCTGGGTGGAATTTAAATAATTACAGAACTGAAATCAAGTTGATTGATGATATTCTTAAAACTGTTACCACAAAACTAGATGACGGTACATACTTATTTGTTGCTGATCACCCAGTGGGAGTGGAATCTCGTGTGCAGGATATGATTCAATTGTTAAGTGGTAAATCAAATGAGGTTCACATAGTAGGAATCTTGGGAATGGGAGGGAGTGGTAAAACAACCATTGCCAAAGCCATTTACAATGAAATTAATCAAAACTTTGAATGTAAAAGTTTCATTGCAAATATAAGGGAAGTTTGGGACCAGGATGATGGCCAAGTTTATTTGCAAGAACAACTTCTTTCAGGCATTTTGAAAACAAGAAGGATGAAATTACATAACATTGAATTGGGAAGAACTACAATAAAGGAAAGCCTTCGCCAAAAAAGGGCATTTGTTGTACTTGATGATATAAATAATTTGGACCAACTAAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTCAAGGAAGTCGGTTAATCATCACAACTAGAGATGAGCATTTGCTGAATGTTCTCAAAGTGGACAATATATACAGAATGAAAGAAATGGATGAAAATGAATCTCTTGAGCTTTTTTGTTGGCATGCATTTAAGCAAGCTGCTCCAGTAGCAGATTTTCTTGAACTCTCTAGAAGGGTTGTTGCTTACTCTGGAAGACTGCCACTAGCCCTTGAAGTTCTTGGCTCTTATTTGTTTGAAAGGGGAATTACTGAGTGGGAAAGTGCATTGTCGAAACTTGAACTTATTCCCAATGATCAAATACAGAAGAAATTGAGAATAAGCTATGATGGTTTAAGTGATGATATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTATAGGTAAGGAGAGAAACTATGTTACACAGATTTTAGATGGTTGTGGACTTCATGCAGAAATTGGGATAACTGTCCTCATAGAGCGAAGCCTTGTAAAAGTTGGCAAGAATAACAAGCTTGAAATGCATGAATTGCTAAAAGTCATGGGAAGGGAGATAATTCGTGAGACATCACCAGAGAATCCTCAGGAGCGTAGCAGATTATGGTTTCATGATGATGTGCTTGATGTGATGACAAACAACATTGCAACAATAGCTGTCAAGGGACTGGCTTTTAATTTACCAAAAAACAGTGATGTTGTTATTGAGACTAAAGCATTTAAGAAGATGAAGAGACTTAGATTGCTTCAACTTGGTCATGTAAAACTTACGGGAGAATTTGAGTATTTATCAAAAGACTTGCGTTGGCTTTGTTGGCATGGATTTCCTTTAAGATACATCCCTCGGAACTTTTTTCTGAACAAATTAGTTGCTATTGACTTAAAGCACAGCAATCTACAATTAGTCTGGAAGGAACCGCAGTTGCTTGATAGGTTGAAAATCCTCAATCTGAGTCATTCCTATTACTTGACTCAAACCCCTGACTTTTCAAGACTGCCAAATCTTGAAAAGCTAATCCTCAAAGATTGTCCACAATTGTCAAAGGTTCACTCAACAATTGGAGATCTCAAATTTCTTATTCTGGTAAATTTGAAGGACTGTAAATCCCTCTGTCACCTCCCAAGAAGTATCTATAAGCTGAAATCCCTGAAATCTCTTGTTCTTTCCGGCTGTTCAAAAATTGACAAGTTGGAAGAGGACATCATGCAAATGGAATCTTTGACAAGTCTAATGGCAGATAACACTGCTATCACTCAAGTGCCTAATTCTCTAGTGAGATCAAAAAGTATCAGATATGTGTCTCTGTGTGGCTATGAAGGATTATCACGTCATGTATTTCCTTCACTGGTTTTGTCTTTAATGTCACCATCAAGTAATCCTATGTATAAAGTTTTTGGGCACATTACATCTTCACTCCAAAGTCTTTCACTTGGTTTATCTGCCAAAAATTATGCAAAATCAAAATCAAGACCAAGCACATCTCAGATAACGTACACACTGACTCCCACATCTCAGATAACACACACACAGACTCCCACAAGACCAAGCATGTCTCAGATAACATACACACAGACTCCCACAAGACCAAGCACATCTCTGATAACATACACAGAGACTCCCACATCTCAGAAAACATGCATAGAGACTCCCACATTAATTGATCTTCAGGACTCCATTCACATTGCAGGGTCTGACAATTTCACTAGTTCTCTTGTTATTCAAGCTGGAGAATGCAGCAAAGCTACTGATACTTTTACAAAGAGTATTTTACAGGGATGGACTAATGATGGATCTAGTGACTGTGACTGTCATTTTCCTGGTGGCATATATCCTAAATGGATAACCTTTGAAGGTGAAGGTTCCTCATTATTTTTTAAAGTGCCTAATAGTGGTAACAAGTTGAAAGGAATGACTATACACATCATTTATTCATCTTCCCTTGTCAACCTGGCATCTGAGTGTGATCTTCTTAGTATCCTGATAATGAATTACACAAAGAACACCATTCGGCCCTATAAGCGAGACACAACAACTTCCCTCAAAGATGAAGAGTGGAAAGGATTGATGTCAAATCTTGAACCTGGTGATGAAGTGGAGATTGTTATAGTTTTGGGACATCGATTTACTGTGAAGAAGACAGTAGCCCATCTAATATTTGATGAAATAACCGATGCCAAAATTATGGACTGCTCATTAGTTCCACACAATTCTCAAATTTGA 4614 0.3845 MSSSSSASSSNTTDPKWMHDFFISFTEEDVAVERFIVTLNAQLGMIGIRACFDHIDMVRNKQETSLLSQLQAIEGSRVSIVVFSEHYGGNSWHLRELGKIMECHREKGQVVFPVFYGVDMWEVRKQRGKFGQVFEQMIKRSLVKEDTALSWRRALADAAFFPGCFVSPEQLSGTILDSASDAINEVVFQGNFVGIVRMMLDSKYLSRPRHPVGIDDHAKNMFESLSHNFEKVHLVGIWGKGGIGKTSIAKVLYNSLCHNFEALSFLMNINDVWKQDNGKDYLQKQLFSDINFPADILIQSTETEKISSPRRALVVLDDVSQTDQLISLCGSREWFGLGSIILITTREKYVLDLLEVDIEYEMKEMDSIKSLELFSWHSFKHFSPTDNLIKRSRKAISYCRGLPLALEVLGSLLLDRTSSEWRSILKLLERNQSMGVPNMLKVSYDFLDDNEKKKTGISKLIERSLLKVDKNNKLEMHDLLREMGREMNHFKPKSKWIHNVFLSFRGEDTRRSFTSHLCSALQNAGIEVYMDEKLGRGENISSSLLQAIEGSRISIIIFSMNYANSSWCLQELEKIMDCHRTIGQEVVPVFYGVEPSEVRNQIGSFGKALEGLVQRISATKDMIISWKRALTEAANLSGWNLNNYRTEIKLIDDILKTVTTKLDDGTYLFVADHPVGVESRVQDMIQLLSGKSNEVHIVGILGMGGSGKTTIAKAIYNEINQNFECKSFIANIREVWDQDDGQVYLQEQLLSGILKTRRMKLHNIELGRTTIKESLRQKRAFVVLDDINNLDQLNALCGSREWFGQGSRLIITTRDEHLLNVLKVDNIYRMKEMDENESLELFCWHAFKQAAPVADFLELSRRVVAYSGRLPLALEVLGSYLFERGITEWESALSKLELIPNDQIQKKLRISYDGLSDDMEKDIFLDICCFFIGKERNYVTQILDGCGLHAEIGITVLIERSLVKVGKNNKLEMHELLKVMGREIIRETSPENPQERSRLWFHDDVLDVMTNNIATIAVKGLAFNLPKNSDVVIETKAFKKMKRLRLLQLGHVKLTGEFEYLSKDLRWLCWHGFPLRYIPRNFFLNKLVAIDLKHSNLQLVWKEPQLLDRLKILNLSHSYYLTQTPDFSRLPNLEKLILKDCPQLSKVHSTIGDLKFLILVNLKDCKSLCHLPRSIYKLKSLKSLVLSGCSKIDKLEEDIMQMESLTSLMADNTAITQVPNSLVRSKSIRYVSLCGYEGLSRHVFPSLVLSLMSPSSNPMYKVFGHITSSLQSLSLGLSAKNYAKSKSRPSTSQITYTLTPTSQITHTQTPTRPSMSQITYTQTPTRPSTSLITYTETPTSQKTCIETPTLIDLQDSIHIAGSDNFTSSLVIQAGECSKATDTFTKSILQGWTNDGSSDCDCHFPGGIYPKWITFEGEGSSLFFKVPNSGNKLKGMTIHIIYSSSLVNLASECDLLSILIMNYTKNTIRPYKRDTTTSLKDEEWKGLMSNLEPGDEVEIVIVLGHRFTVKKTVAHLIFDEITDAKIMDCSLVPHNSQI. 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05336 1537 MobiDBLite consensus disorder prediction 1303 1331 - -
Seca10g05336 1537 ProSiteProfiles TIR domain profile. 17 183 IPR000157 GO:0007165
Seca10g05336 1537 SUPERFAMILY Toll/Interleukin receptor TIR domain 494 639 IPR035897 -
Seca10g05336 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 661 927 IPR027417 -
Seca10g05336 1537 Pfam TIR domain 498 662 IPR000157 GO:0007165
Seca10g05336 1537 Pfam TIR domain 19 157 IPR000157 GO:0007165
Seca10g05336 1537 Pfam NB-ARC domain 216 438 IPR002182 GO:0043531
Seca10g05336 1537 Pfam NB-ARC domain 678 906 IPR002182 GO:0043531
Seca10g05336 1537 ProSiteProfiles TIR domain profile. 496 662 IPR000157 GO:0007165
Seca10g05336 1537 SMART AAA_5 694 834 IPR003593 GO:0016887
Seca10g05336 1537 Gene3D - 13 189 IPR035897 -
Seca10g05336 1537 Gene3D - 492 664 IPR035897 -
Seca10g05336 1537 SMART till_3 497 636 IPR000157 GO:0007165
Seca10g05336 1537 SMART till_3 18 161 IPR000157 GO:0007165
Seca10g05336 1537 Gene3D Ribonuclease Inhibitor 1005 1293 IPR032675 -
Seca10g05336 1537 Gene3D - 195 358 IPR027417 -
Seca10g05336 1537 Gene3D - 665 827 IPR027417 -
Seca10g05336 1537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 453 IPR027417 -
Seca10g05336 1537 Gene3D - 365 448 IPR042197 -
Seca10g05336 1537 Gene3D - 832 916 IPR042197 -
Seca10g05336 1537 FunFam Disease resistance protein (TIR-NBS-LRR class) 494 664 - -
Seca10g05336 1537 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 156 IPR035897 -
Seca10g05336 1537 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 498 1239 IPR044974 GO:0006952
Seca10g05336 1537 SUPERFAMILY L domain-like 987 1275 - -
Seca10g05336 1537 PRINTS Disease resistance protein signature 697 712 - -
Seca10g05336 1537 PRINTS Disease resistance protein signature 867 881 - -
Seca10g05336 1537 PRINTS Disease resistance protein signature 774 788 - -
Seca10g05336 1537 PRINTS Disease resistance protein signature 1176 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05336 Seca-Chr10 121648958 121663853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05336 19 487 WRKY Transcription Factor Family AT4G12020 23.904 7.26e-25 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05336 - - pcin:129288830 1369.76