Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05329 ATGATTTTTGGTTCTGTCAGCACATGGGTTATGTTTATTTTCTCTTCAAGTTTCATGATTTGGCATAAAGGAAATGAGGGTATTCAAACTCAGGTTTTTGGGATGTTGGAGTTCAAATGGCTAATTCGTTTTTCTTTCTTTATGTTTGTAGCAATTTCAACTCTGAAGACGGCATCGGATAGATACAGGGCACACAAATCTGAGGCAGTGTTGAACAAAGAGTGTGATAAGAATCAAAACTATGAACTAAACAATAAGAATAATGAAAAAGAAAGACAATGTGAGGATGAGAAAGAGAAGGAAGATTCTGTTATCACTAGCAGGGCACTTTCCTCCTCACTTGAGAAGAAAACTGACCGGAAACTATGGAAGTCATGGACACCAGAGTTGCATCGCAAATTTCTTGAGGCTTTAGAGGTGCTTGGAGGTTCTGAAGTGGCAACTCCAAAGCAAATTAGAGCAGTAATGAAGGTTGATGGCCTGACTAATGATGAAGTAAAGAGTTATTTACAAAAATACAGACTTCATACAAGAAGAGTTCCACCTGCTAATCTGTCTGTTGAAGTTCCTGAAGGTTTGTGGATTTACAGTAACTTCTCAAAGGATAGCAGTTCTGATTCTGATTCTGGTTCTGGTTCCAGTTCCGGTTCTCCTCAAGGTCCCTTTCAGTTAACAACAGAATCTGGGGAAGGGACATCCACAACTAACATGGAAGAAGATGAAGAATTAATAATTGAGAGAGGTTTTGCAGATAAAAGTTTTACAACTGCATAA 774 0.3837 MIFGSVSTWVMFIFSSSFMIWHKGNEGIQTQVFGMLEFKWLIRFSFFMFVAISTLKTASDRYRAHKSEAVLNKECDKNQNYELNNKNNEKERQCEDEKEKEDSVITSRALSSSLEKKTDRKLWKSWTPELHRKFLEALEVLGGSEVATPKQIRAVMKVDGLTNDEVKSYLQKYRLHTRRVPPANLSVEVPEGLWIYSNFSKDSSSDSDSGSGSSSGSPQGPFQLTTESGEGTSTTNMEEDEELIIERGFADKSFTTA. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05329 257 MobiDBLite consensus disorder prediction 204 257 - -
Seca10g05329 257 Pfam Myb-like DNA-binding domain 125 174 IPR001005 -
Seca10g05329 257 NCBIfam myb-like DNA-binding domain, SHAQKYF class 125 176 IPR006447 GO:0003677
Seca10g05329 257 Gene3D - 123 178 - -
Seca10g05329 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 178 IPR017930 -
Seca10g05329 257 Coils Coil 71 100 - -
Seca10g05329 257 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 77 241 IPR044787 GO:0003700|GO:0006355
Seca10g05329 257 MobiDBLite consensus disorder prediction 204 233 - -
Seca10g05329 257 SUPERFAMILY Homeodomain-like 121 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05329 Seca-Chr10 121501731 121503923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05329 112 200 G2-like Transcription Factor Family AT2G03500 53.125 3.37e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g05329 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05329 - - nnu:104601936 139.043