Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05328 ATGTTGGAGTTCAAATGTTCAGAGGGAAAATGGCTAATTCGTTATTCTTTCTTTATGTTTGTAGCAATTTCAACTCTGAAGGGGGGATTAGATAGATACAGGGCACACAAATCTGAGGCAGTGTTGAACAAAGAGTGTGATAAGAATCAAAACTATGAACTAGACAATAAGAATAATGAAAAAGAAATACAATGTGTGGATGAGAAAGAGAAGGAAGATTCTGTTATCTCTAGCAGGGCACTTTCCTCCTCACCTGAGAAGAAAAATGACCAGAAACTATGGAAGCCATGGACACCAGAGTTGCATCTCAAATTTCTTGAGGCTTTAGAGGTGCTTGGAGGTTCTGAAGTGGCAACTCCAAAGCAAATTAGAGCAGTAATGAAGGTTGATGGCCTGACTAATGATGAAGTAAAGAGTTATTTACTAAAACACAGATTTCATACAAGAAGAGTTCCACCTGCTAATCTGTCTGTTGAAGTTCCTCAAAGTTTGTGGATTTACAGTAACTTCTCAAAGGATAGCAGTTGTGATTCTGATTCTGGTTCCAGTTCCAGTTCCAGTTCTCCTCAAGGTCCCTTTCCGTTAACAACAGAATCTGGGGAAGGGACATCCGCAACTAACATGGAAGAAGATGAAGATGTAAAATCTGAGGAAAAACAACACACACAAAACTAG 675 0.3911 MLEFKCSEGKWLIRYSFFMFVAISTLKGGLDRYRAHKSEAVLNKECDKNQNYELDNKNNEKEIQCVDEKEKEDSVISSRALSSSPEKKNDQKLWKPWTPELHLKFLEALEVLGGSEVATPKQIRAVMKVDGLTNDEVKSYLLKHRFHTRRVPPANLSVEVPQSLWIYSNFSKDSSCDSDSGSSSSSSSPQGPFPLTTESGEGTSATNMEEDEDVKSEEKQHTQN. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05328 224 Coils Coil 42 69 - -
Seca10g05328 224 MobiDBLite consensus disorder prediction 174 204 - -
Seca10g05328 224 MobiDBLite consensus disorder prediction 208 224 - -
Seca10g05328 224 Gene3D - 95 148 - -
Seca10g05328 224 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 56 220 IPR044787 GO:0003700|GO:0006355
Seca10g05328 224 SUPERFAMILY Homeodomain-like 94 150 IPR009057 -
Seca10g05328 224 NCBIfam myb-like DNA-binding domain, SHAQKYF class 96 147 IPR006447 GO:0003677
Seca10g05328 224 MobiDBLite consensus disorder prediction 174 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05328 Seca-Chr10 121463351 121465609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05328 83 154 G2-like Transcription Factor Family AT2G03500 59.722 6.79e-24 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g05328 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05328 - - gmx:100809323 129.413