Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05327 ATGGATCGTTCTGCGACCACTGTTGGGCCAGGAATGGATATACCGATCATGCATGACAGTGACAGGTATGAGCTGGTTCGTGATATTGGGTCTGGGAATTTTGGGGTGGCCAGGCTCATGAGGGACAAGCACACTGATGAGCTTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATAGATGAAAATGTACAAAGGGAAATTATAAATCACAGATCACTGAGGCATCCCAATATTGTCAGGTTCAAGGAGGTCATACTGACCCCTACACATTTAGCTATAGTCATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTCAGTGAGGTTACCATTAATGCCAATTATGTTGTGCTGCAGGCACGCTTCTTCTTCCAACAACTTATATCTGGGGTTAGCTACTGCCATGCAATGCAAGTATGCCATCGTGACTTGAAATTAGAGAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCCTCAGTGCTGCATTCACAACCAAAATCTACAGTTGGTACCCCTGCATACATTGCTCCTGAAGTTTTGCTAAAGAAGGAATATGATGGCAAGATTGCAGATGTTTGGTCATGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGGAAGACAATTCATAGGATTTTAAAAGTCCAGTACTCAATTCCTGATTATGTTCATATATCACCCGAGTGCCGTCATCTGATCTCAAGGATCTTTGTTGCAGATCCTGCACAGAGAATAAATATTCCTGAGATTAGAGAACACGAGTGGTTTTTGAAGAACCTTCCAGCTGATCTCATAGTTGATCATACAATGAACAACCAGTTTGAGGAGCCTGATCAACCAATGCAGAGCATTGAAGAAATCATGCAGATAATTAGCGAGGCTACAATTCCTGCAGCTGGAACTCAGTCTCTCAACCAGTATCTTACTGGTAGTTTGGATATCGATGACATGGACGAGGACCTAGAGACAGATCCTGACCTTGATATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1116 0.4256 MDRSATTVGPGMDIPIMHDSDRYELVRDIGSGNFGVARLMRDKHTDELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEVTINANYVVLQARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVHISPECRHLISRIFVADPAQRINIPEIREHEWFLKNLPADLIVDHTMNNQFEEPDQPMQSIEEIMQIISEATIPAAGTQSLNQYLTGSLDIDDMDEDLETDPDLDIDSSGEIVYAM. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05327 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Seca10g05327 371 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Seca10g05327 371 Pfam Protein kinase domain 23 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05327 371 SMART serkin_6 23 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05327 371 PANTHER SERINE/THREONINE KINASE 22 314 - -
Seca10g05327 371 SUPERFAMILY Protein kinase-like (PK-like) 15 321 IPR011009 -
Seca10g05327 371 FunFam Serine/threonine-protein kinase SRK2E 99 296 - -
Seca10g05327 371 Gene3D Transferase(Phosphotransferase) domain 1 99 295 - -
Seca10g05327 371 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Seca10g05327 371 FunFam Serine/threonine-protein kinase SRK2E 15 98 - -
Seca10g05327 371 ProSiteProfiles Protein kinase domain profile. 23 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05327 Seca-Chr10 121457558 121461948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05327 22 311 CBL-interacting serine-threonine protein kinases AT4G24400 40.789 2.12e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Seca10g05327 Pkinase 4.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05327 K14498 - gmx:100804702 671.389