LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g05309	ATGGCATTTTCTGACACCACCAAGCAGCTCCCACTGAAACCAATCCCAGGCAGCTATGGCCTTCCATTCTTCGGACCAATCAGCGACAGACACGACTTCTTCTACCACCAAGGCCGCGACAACTTCTTCTCCACCAGAATCCAAAAATACAACTCCACCATCTTCCGAACCAACATGCCACCTGGCCCTTTCATCTCCTCCGATCCAAGAGTCATTGTCCTCCTCGACGGTGCCTCCTTCCCAATCCTCTTCGACAACAACAAGGTCCAAAAGCGCAACGTCCTCGACGGCACCTTCATGCCTTCCACCAGTTTCACCGGCGGCTACCGCGTCTGTGCATACCTTGACACCACAGAACCCAACCACGCCGTTTTAAAACAATTCTTCCTCAACATTCTCCTCTCACGAAAAGACTCTTTTGTCCCTCTCTTCCGCAGCACGCTATCGGAGTCCTTCGTCAAGATAGAGGACCAGCTGTCAGGAAAGACCGGCAAGGCTGACTTCAACGACGTGTTCAGCAACGCATCCTTCAACTTCATGTTCCGTCTCCTCTGTGACAACAAACACCCCTTGGAGACCAAGCTCGGTTCCCAAGGCCCAAAACTGTTTGACACGTGGCTCCTCTTTCAGCTCGCGCCACTTGCAACTTTGGGCCTCCCCAAGATCTTCAACCACCTCGAGGATCTCTTGCTCCGCACGCTCCCCTTCCCAGCGTGTTTGTCCAGATCCAACTATAATAAACTCTATGAGGTGTTTTATGCAACTGCGGGAACTGTGTTGGACGAGGCAGAGAAGGTTGGGTTAAAAAGAAGCGAAGCATGCCATAACCTCATTTTCATGGCGGGTTTCAATGCTTATGGTGGGTTGAAGAACCAGTTCCCAGCGGTGATCAAATGGGTAGGTTTGGGTGGAGAGGAACTCCATAAGCAACTTGCAAAGGAGATAAGGAGTGTGGTGAAAGAGGAAGGTGGAGTAACAATTCAATCCTTAGAGAAAATGCCTTTGATGAAATCAGTGGTTTATGAGGTGATGAGGATTGAGCCTGTTGTGCCGTACCAATACGCGAGGGCGAGGGAGGACTTGGTAGTGCAAAGCCACGATGCTGCGTTTGAGATCAAGAAGGGTGAGATGATCTTTGGGTTCCAACCGTTTGCGACAAAGGATCCTAGGATTTTCGAGGATCCTGAGGAGTTTGTGGCTAGGAGGTTTATGGGGGAAGGTGAGAAGATGTTGAAGCACGTGTTGTGGTCGAATGGGTTTGAGACGGAGGAGCCCTCTATGGATAATAAACAGTGTCCAGGGAAGAATCTAGTGGTGCTACTATGTAGGTTGTTCTTGGTGGAGTTCTTCTTGCGTTACGATACGTTTCAGTTTGAGTATAAAACCACTGCTTTTGGTTCTGCTATTACCATCAACTCTCTCACCAAGGCCTCCACCTTGTGA	1443	0.4983	MAFSDTTKQLPLKPIPGSYGLPFFGPISDRHDFFYHQGRDNFFSTRIQKYNSTIFRTNMPPGPFISSDPRVIVLLDGASFPILFDNNKVQKRNVLDGTFMPSTSFTGGYRVCAYLDTTEPNHAVLKQFFLNILLSRKDSFVPLFRSTLSESFVKIEDQLSGKTGKADFNDVFSNASFNFMFRLLCDNKHPLETKLGSQGPKLFDTWLLFQLAPLATLGLPKIFNHLEDLLLRTLPFPACLSRSNYNKLYEVFYATAGTVLDEAEKVGLKRSEACHNLIFMAGFNAYGGLKNQFPAVIKWVGLGGEELHKQLAKEIRSVVKEEGGVTIQSLEKMPLMKSVVYEVMRIEPVVPYQYARAREDLVVQSHDAAFEIKKGEMIFGFQPFATKDPRIFEDPEEFVARRFMGEGEKMLKHVLWSNGFETEEPSMDNKQCPGKNLVVLLCRLFLVEFFLRYDTFQFEYKTTAFGSAITINSLTKASTL.	481

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca10g05309	480	CDD	CYP74	45	472	-	-
Seca10g05309	480	SUPERFAMILY	Cytochrome P450	9	456	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Seca10g05309	480	Gene3D	Cytochrome P450	6	479	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Seca10g05309	480	PRINTS	E-class P450 group IV signature	370	384	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Seca10g05309	480	PRINTS	E-class P450 group IV signature	386	404	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Seca10g05309	480	PRINTS	E-class P450 group IV signature	432	450	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Seca10g05309	480	PRINTS	E-class P450 group IV signature	333	349	IPR002403	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Seca10g05309	480	Pfam	Cytochrome P450	306	451	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Seca10g05309	480	PANTHER	CYTOCHROME P450 26	9	453	-	-
Seca10g05309	480	FunFam	Allene oxide synthase, chloroplastic	10	479	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g05309	Seca-Chr10	121132960	121137021	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g05309	1	478	Cytochrome P450	AT5G42650	50.833	1.01e-176	504

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g05309	K01723		-	gmx:100801764	778.089

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca10g05309	10	121132960	121137021	Seca10g05309	10	121132960	121137021	ECH

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