Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05299 ATGGGGAAAGAAGAATCCAATAGAACCAATAAATTTGGTACACCTTACAAATTTATGGTGCCTCAAGATGTGACTCATGAAACTATAAACAAACCTATTCAACCACTTTGGACTACTTCTATGCAGGCACATTACAATCCTGGGTTACCTACAATTCCCATTTTAAATCCACATGCTGCCAATTCATACTTGCATCGCTATGTGTTGCCAAATCAGGCAAATAGCACACTACTTCAACGTGATGCTCCGCATGACCCCAGCAAGCTTTCCAATAAAATTCCACCAGTTAAGGATGCTGCATTGGCTTTTTCGGAAATGGTACACAGGACTTTTGGTGAAAAAAACCAGTGTTCGATGAAAAAAATTGCCAGAAACTTACAACCTGAAAGTTTAATAACCGGGGAAGCAAGAGAAAATGGAAGTGGATCTTCAATACCAAAAAATGACACTGATGGAATGTCAAGGAGTGCAGCAACTGGAAGCAAGGGATCACCAGATGAAACACATGACACTAACAATGATTTTCCTTCACCCAAAGAGGATCAATCTAATATAATGCTTGGAAATGAAAATTCAACCCTTGATAATCAGAATTTGGAAACAGGTCTCAATGCATCTGGCACTACTGCTTGCCTCACAAAGCTGGATTTTCCTTCAACCAAAGAGGATCAATCTAATATAATGCTTGGAAATGAAAATTCAACCCTTAATCAGAATTTGGAAACAGGTCTCAATGCATCTGGCACTACTGCTTGCCTCACAGATCTGGATGATGAGGATGAAATAAGAAGAGAAAGAAAAAGACAATCAAACAGGGAATCGGCTAAGAGATCAAGGCTACGGAAACTGCACGAATGTAAAGAGCTACATAAAGACTGGGACACTCTTAAGGATGAAAACTCCTTGCTTACACAAAATCTCAAAAGGCTTTCTGAGGAATGTCTGGAGCTCAGCAATGAAAATGATGCCATACAGGAAGAGCTGATTAAGATGTATGGACCAGAATCAATAGCAGATCTATTGCCCATGAAGCCTGCCTAA 1041 0.3977 MGKEESNRTNKFGTPYKFMVPQDVTHETINKPIQPLWTTSMQAHYNPGLPTIPILNPHAANSYLHRYVLPNQANSTLLQRDAPHDPSKLSNKIPPVKDAALAFSEMVHRTFGEKNQCSMKKIARNLQPESLITGEARENGSGSSIPKNDTDGMSRSAATGSKGSPDETHDTNNDFPSPKEDQSNIMLGNENSTLDNQNLETGLNASGTTACLTKLDFPSTKEDQSNIMLGNENSTLNQNLETGLNASGTTACLTDLDDEDEIRRERKRQSNRESAKRSRLRKLHECKELHKDWDTLKDENSLLTQNLKRLSEECLELSNENDAIQEELIKMYGPESIADLLPMKPA. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05299 346 MobiDBLite consensus disorder prediction 128 201 - -
Seca10g05299 346 Coils Coil 293 327 - -
Seca10g05299 346 Gene3D - 258 325 - -
Seca10g05299 346 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 266 281 IPR004827 GO:0003700|GO:0006355
Seca10g05299 346 PANTHER G-BOX-BINDING FACTOR 3-RELATED 32 334 IPR044827 GO:0003700|GO:0006355|GO:0043565
Seca10g05299 346 MobiDBLite consensus disorder prediction 177 201 - -
Seca10g05299 346 Pfam bZIP transcription factor 259 321 IPR004827 GO:0003700|GO:0006355
Seca10g05299 346 SUPERFAMILY Leucine zipper domain 262 318 IPR046347 GO:0003700|GO:0006355
Seca10g05299 346 SMART brlzneu 259 323 IPR004827 GO:0003700|GO:0006355
Seca10g05299 346 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 261 324 IPR004827 GO:0003700|GO:0006355
Seca10g05299 346 CDD bZIP_plant_GBF1 264 314 IPR045314 GO:0003700|GO:0006355
Seca10g05299 346 MobiDBLite consensus disorder prediction 132 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05299 Seca-Chr10 120986132 120992360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05299 15 340 bZIP Transcription Factor Family AT4G36730 27.744 8.39e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca10g05299 bZIP_1 4.4e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05299 K09060 - gmx:102665715 317.005