Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05287 ATGGAAAAGGTGGTTCCTCCTCTTCCTCCCATGTCGGTGCACGGTCTATTCTACGATTCGCCTTCCATGGCGAATAGCAAGAAGCGCGATCTGCCGTACGACGTCGTTTCACAGAACGAGAATTGGAACCCTAAGGAGTGGAATTGGGATAGCGTAAGATTCGTGGCGAAACCTGCCAGCAATAGAGTCTCAATTGAAGAAGATGAGGGTTTGAGATTGAATCTCGGTGGTGTTGGTGGCGGTGTGACTGTGAATAGGGCGAATAAGAGGGTGCGTTCAGGTTCTCCTGGAACGGCGTCGTATCCGATGTGTCAGGTGGATAACTGTGGAGAGGATCTATCGAAGGCGAAGGACTATCATCGAAGGCACAAGGTGTGTGAGGCTCACAGCAAGGCTTCGAAAGCGCTTGTTGCGAATCAAATGCAACGGTTCTGTCAACAGTGTAGCAGGTTTCACCCGCTATCGGAGTTTGATGAAGGGAAGCGGAGCTGTCGCCGGAGACTTGCCGGACACAATCGACGCCGGAGGAAGACGCAGCCAGAAGACGTTACCTCGCCACCCGCCCCCAACGGCGCTTCCGCCGCCGCCAATTTGGAAATTTTCAATTTGTTGACTGCAATAGCTGGAGGCTCCCAAGGAAAATTTGAGGACAGAAGGTCACAAGTTCCAGACAGAGAACAGCTTGTTCAGATTCTTAATAGGATACCTTTGCCTGCTGATCTTACAGCAAAGTTGCTGGATGCTGGTAATTTTAATGGGAAAAAAGATCAAGTGCAAATGCAAACTTCATCATCCTATGTTCATCATGATGGCCAACTGAACCACACCCCCTCTGCCCCCTTAACTAAGGACTTACTTGCTGTTCTTTCATCCACTCTATCATCTTCTCCTCCCAATGCTGCTGCTGCATCACTCTCTGAAAATGGCAGCCACAGTAGCAATGGCAGTGGTGACAAGTCTGGGACCACTAGTGCTGACCAGACAAGAGGACAACAATTCACTTCAGTTGGTGGAGAAAGAAGCAGTGGCAGTTCCCAGTCTCCAGTTGAAGATTCGGATAGCCAGGAGGATGTTCGACTTAATCTACCCCTGCAACTTTTTAGCTCCTCTCCTGAAGATGACAGCCTGCCAAAATTGGCATCTGCCCGAAAGTATTTCTCATCAGACAGTAGTAATCCTGTGGAAGAGAGGTCTCCATCGTCATCTCCTCCAGTTGTGGAGATGCAGTTTGGTTTGCTGGGTGGGGATAGAGGTTTCAGGCCCGAGAGCATGTCAACTGCAAGAGGAGGCAATGTTCAGAAGGAAGCTAGCCAAAGTCATAGTTATAATATCTCCCTTGATCTCTTTAAAGGGTCAAATAACAGGATCCAACAACCTAGCTCACTTCAAAGTGTTCCATTTCAACCTGGGTATACATCTTCGGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCGTACAGGGAAAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCAGGAACGTTGCGAACACAGATTTACAATTGGCTTTCTAGTAGGCCATCAGACTTGGAGAGCTACATAAGGCCTGGCTGTGTGGTACTATCAATTTACACTACGATGTCTTCTGCTGCCTGGGAGCAACTAGAGGAAAACTTCCTCCGACGTGTTCATTCATTAATTCAAAATTCAGATTCTGATTTTTGGAGAAATGGAAGATTTCTAGTTCATTCTGGCAGTCAGTTAGCATCGCACAAAGATGGAAAGATACGCTTGTGCAAACCATGGAGAACGTGGAGGTCTCCAGAGTTGATATCTGTGTCCCCTTTGGCAATTGTTAATGGACAAGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAAGTCCAGGCACAAAGATTCATTGCACAGGTACTGGTTGTTACACATCGGCAGAAGTTATAGGATCTGCATATCCTGGTATGGCTTATGATGAGATAAAATTGGGTGGGTTTAAAGTTCAGAATGAATCTCCCAGTGTTCTGGGTCGCTGTTTCATTGAGGTTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGCAACCATTTGCAAGGAATTGAAACTGCTTGAGTCTGAATTTGATGAGGAGGAACAAATATGTGATGCCATTTCAGAGGAGCATGAATATCATTTTGGGCGGCCCAGGTCAAGGGAGGAGGCTTTGCACTTCTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGGTTTTCATATGTGCCTGAGGTTCCAGATTATTCGCTTGACAGGTTCAAATTTGTACTCACGTTTGCTGTTGAAAGAAACTGTTGTATGTTAGTCAAAACCCTTCTGGATATGCTGGTTCATAAACACTTGGAAGGGGAATGGTTGTCAACAAGGTCAATGGAGATGTTGAATGCAATCCAACTCTTAAACAGAGCAGTGAAAAGAAAGTACATAAGCATGGTTGATTTGCTCATCCACTACTCTATACCTAGCAAAAATGATACGTCCAGGAAATATGTGTTTCCACCAAATCTTGAGGGCCCTGGTGGTGTTACACCCTTGCACTTGGCAGCATGTACATCGTCTTCTGATGGTGTAGTTGACTCTTTAACGAATGACCCACAGGAGATTGGGTTGAAGTGCTGGGAATCCCTTGTGGATGCAAATGGGCAGACTCCACATGCATATGCCATGATGAGGAATAATCACTCCTATAATGTGCTGGTTGCTCGTAAACTTGCTGATAGACAAAGAGGTGAAATTTCACTTAGAATTGACAATGAGATAGAGCAATCATCACTGAGAGTTGAGCTTACGCAAAAACAAAGTAACCAAGTCAAACGAGGTGACAATTCTTGTGCCAAGTGTGCAACTGCAGCAATTCGCTACAACAGAAGAGTTTCAGGTTCACGAGGCTGGCTTCACCGCCCCTTTATTCATTCAATTCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTCTTCCGTGGAACCCCTTACGTAGGCTCAAGTGGTCCCTTCACCTGGGAAAATTTGGATTATGGCACAATGTGA 3078 0.4565 MEKVVPPLPPMSVHGLFYDSPSMANSKKRDLPYDVVSQNENWNPKEWNWDSVRFVAKPASNRVSIEEDEGLRLNLGGVGGGVTVNRANKRVRSGSPGTASYPMCQVDNCGEDLSKAKDYHRRHKVCEAHSKASKALVANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSPPAPNGASAAANLEIFNLLTAIAGGSQGKFEDRRSQVPDREQLVQILNRIPLPADLTAKLLDAGNFNGKKDQVQMQTSSSYVHHDGQLNHTPSAPLTKDLLAVLSSTLSSSPPNAAAASLSENGSHSSNGSGDKSGTTSADQTRGQQFTSVGGERSSGSSQSPVEDSDSQEDVRLNLPLQLFSSSPEDDSLPKLASARKYFSSDSSNPVEERSPSSSPPVVEMQFGLLGGDRGFRPESMSTARGGNVQKEASQSHSYNISLDLFKGSNNRIQQPSSLQSVPFQPGYTSSGSDHSPPSLNSDAQDRTGKIMFKLFDKHPSHFPGTLRTQIYNWLSSRPSDLESYIRPGCVVLSIYTTMSSAAWEQLEENFLRRVHSLIQNSDSDFWRNGRFLVHSGSQLASHKDGKIRLCKPWRTWRSPELISVSPLAIVNGQETSISLKGRNLSSPGTKIHCTGTGCYTSAEVIGSAYPGMAYDEIKLGGFKVQNESPSVLGRCFIEVENGFKGNSFPVIIADATICKELKLLESEFDEEEQICDAISEEHEYHFGRPRSREEALHFLNELGWLFQRERFSYVPEVPDYSLDRFKFVLTFAVERNCCMLVKTLLDMLVHKHLEGEWLSTRSMEMLNAIQLLNRAVKRKYISMVDLLIHYSIPSKNDTSRKYVFPPNLEGPGGVTPLHLAACTSSSDGVVDSLTNDPQEIGLKCWESLVDANGQTPHAYAMMRNNHSYNVLVARKLADRQRGEISLRIDNEIEQSSLRVELTQKQSNQVKRGDNSCAKCATAAIRYNRRVSGSRGWLHRPFIHSILAVAAVCVCVCVFFRGTPYVGSSGPFTWENLDYGTM. 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05287 1025 ProSiteProfiles Zinc finger SBP-type profile. 101 178 IPR004333 GO:0003677
Seca10g05287 1025 MobiDBLite consensus disorder prediction 384 438 - -
Seca10g05287 1025 MobiDBLite consensus disorder prediction 457 487 - -
Seca10g05287 1025 SUPERFAMILY SBT domain 102 182 IPR036893 GO:0003677|GO:0005634
Seca10g05287 1025 SUPERFAMILY Ankyrin repeat 772 916 IPR036770 -
Seca10g05287 1025 Coils Coil 705 725 - -
Seca10g05287 1025 MobiDBLite consensus disorder prediction 384 405 - -
Seca10g05287 1025 MobiDBLite consensus disorder prediction 165 192 - -
Seca10g05287 1025 Pfam SBP domain 104 177 IPR004333 GO:0003677
Seca10g05287 1025 MobiDBLite consensus disorder prediction 296 356 - -
Seca10g05287 1025 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 85 809 IPR044817 GO:0003677
Seca10g05287 1025 MobiDBLite consensus disorder prediction 296 351 - -
Seca10g05287 1025 Gene3D - 768 956 IPR036770 -
Seca10g05287 1025 MobiDBLite consensus disorder prediction 257 279 - -
Seca10g05287 1025 Gene3D - 94 165 IPR036893 GO:0003677|GO:0005634
Seca10g05287 1025 FunFam Squamosa promoter-binding-like protein 14 95 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05287 Seca-Chr10 120817105 120824024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05287 27 1025 SBP-box Gene Family AT1G20980 53.640 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca10g05287 SBP 3.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05287 - - gmx:100819004 1556.58