Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05280 ATGGGTAGTTGTGGAAGGGAAGGTGTAGTGAGGCAGTATATAAGATCAAAAGTCCCTCGTTTAAGATGGACCCCTGAATTGCATCGTTGCTTTGTTTATGCCATTGAGACTCTTGGAGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAGTTGATGGATGTTAAGGGGCTAACAATTTCACATGTCAAGAGCCATCTGCAGATGTACAGAAGCATGAGAGGTGACTCTTGCAGACAAGATAGGACTTCCACCCAACAAAAAAAACAATCTTTTCAGGAGCATGATGATGGGTGTGGTGATGAAGTCAATGATGTTGGTGTTCACTCTTGTTTTAAACCCATTGCAAAAGAATCTGATTCCCTCTTCAGCTACAGTAATTTCCCCTCAAAAAGAGCCAGAATAGAGAAGACAAGTTCCCTCTCAGGAATCATAGAATGCAGCCAAAGAATAAGTGAAGCAGTTCCAAATCCATACACAACTTTTTATGATTATGTGCAGGCCATGGTTCAGCAGCAGAAGGGAATAAAAAAGATTTGTGTTGGTTCAATATGGCAAACCCAATCCAATTTCAAAATCTTTCCTATGCTACCAAAGCAAGAAACTGATTTGCTCCAGGTTTCCAAGTTAAATGACAAACAACCTTTGAATGAAGGGAACACTAGGAGGGTAAATGCAAAAGATGAAGATATAGGAGATTGTGAGTTGTCACTGTCAATCTCATTACCCCATCCTTCAACCTCTCAGAGAAGTAATGGTTCTTCAGCCAATGAGATTAGAGGCTCTGGATTTAGCAACTACATGGGGTGCTCCAGTTCTTCCTCTGTCCAAAACAGAGTTAACTTAGACCTATCTTTAGCCATTTGA 867 0.4095 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGDSCRQDRTSTQQKKQSFQEHDDGCGDEVNDVGVHSCFKPIAKESDSLFSYSNFPSKRARIEKTSSLSGIIECSQRISEAVPNPYTTFYDYVQAMVQQQKGIKKICVGSIWQTQSNFKIFPMLPKQETDLLQVSKLNDKQPLNEGNTRRVNAKDEDIGDCELSLSISLPHPSTSQRSNGSSANEIRGSGFSNYMGCSSSSSVQNRVNLDLSLAI. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05280 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Seca10g05280 288 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 15 130 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca10g05280 288 MobiDBLite consensus disorder prediction 74 98 - -
Seca10g05280 288 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Seca10g05280 288 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Seca10g05280 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Seca10g05280 288 Gene3D - 18 74 - -
Seca10g05280 288 MobiDBLite consensus disorder prediction 75 98 - -
Seca10g05280 288 FunFam Myb family transcription factor 17 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05280 Seca-Chr10 120720819 120725044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05280 1 74 G2-like Transcription Factor Family AT1G14600 72.152 5.48e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g05280 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05280 - - gmx:100810994 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05280 10 120720819 120725044 Seca10g05280 10 120720819 120725044 ECH