Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05279 ATGGCAGCACCTTTTTCAGCAGCATCGTTGTTTGGAGTAAGAGAAGAGGATCAGAATCAGATGAATCAACAGCAGCATTCCTCAACACCATCAGCATCAGCATCAGGATCAGCAAATCCAACTGCACCACCTCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAGCAAGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTCCCTTGGAAGCTAAAGCAGAAAACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGAATCAAAAAACACTATTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCCCATTCCAAGACTTGTGGCACCAGGGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGAAGAGACAGTTTCATCACCCACAGGGCCTTCTGTGATGCATTGGCACAAGAAAGTGGAAGACAGCCATCCAATAATAACCTCATCAACAGTGCTGCCATTAGCAACCAACTGTATGGAGGAAGTAGCAACCTATCTTCCTTAATGCCTCCCCATATCCCTCATGATCATAACAACAACCAAAACGACAACCACCTCTTGCGTTTTGGCGGTGCAACAACCCCTGCCCAATTTAACCACCACATCCTCTCACCACCTCCTCCTCCTCCTCCATCATTCTTCAACATCCCAGAATCAAGCCAAACCCAAAATTACCATCATGACCCTCACACCCAGCAGCAAGGGTTTGTTCTGCCATTGCCATCATCAAACAAGCCAACAACATTCCAGCAAGGGCTATACTGTGACCATTTCAACATGATGAATAATAATAACAATGAAGGGTCTTCTAGCTTCTTCTCTCCCATGATGATGGCTGCTGCTGCTGCTGGTGGTGGTGGTGATCATCATCATCATCATCAAACAAGCATGAACACTATGTCCATGTCTATGTCTCCTCACATGTCAGCAACAGCACTGCTTCAAAAAGCTGCACAAATTGGTGCAAGTTCAAGCAATAACAACAACAACACTGTCTCATCATTGCTGAGAAGCTTTGGCAGCACCTCTTCTAATTCCTCTAATCCAAACATGCAAGAGGTGATGAACTCATTTGCAGCAGGGCTTACTACTGGGTTTCAACCATATGGTGATCATATTCATGGCATTATCAATGAAGAAGCAGAAGAAGCAAAAAAACTGCAACAAACAGTAGTGAGTGGTGGTGGTGTTGGAGGATCTGAGAGGCTCACTAGGGATTTTCTTGGAGTTGGTGGTCAGAATCAGAATCAGATTGTGAGAAGCATCAGTGGAAGAGTTTCACAGCAGAGAGAAGAAGAAAAAGAAAAAGAAGGAAGGTTCAATGATGCTGCGCCGTCAGGTCAATCTTTTGGAGGGAACTTTCAGTGA 1518 0.4486 MAAPFSAASLFGVREEDQNQMNQQQHSSTPSASASGSANPTAPPQKKRRNQPGTPSKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESGRQPSNNNLINSAAISNQLYGGSSNLSSLMPPHIPHDHNNNQNDNHLLRFGGATTPAQFNHHILSPPPPPPPSFFNIPESSQTQNYHHDPHTQQQGFVLPLPSSNKPTTFQQGLYCDHFNMMNNNNNEGSSSFFSPMMMAAAAAGGGGDHHHHHQTSMNTMSMSMSPHMSATALLQKAAQIGASSSNNNNNTVSSLLRSFGSTSSNSSNPNMQEVMNSFAAGLTTGFQPYGDHIHGIINEEAEEAKKLQQTVVSGGGVGGSERLTRDFLGVGGQNQNQIVRSISGRVSQQREEEKEKEGRFNDAAPSGQSFGGNFQ. 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05279 505 FunFam protein indeterminate-domain 5, chloroplastic-like 112 191 - -
Seca10g05279 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Seca10g05279 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 474 IPR031140 -
Seca10g05279 505 Pfam Zinc-finger double-stranded RNA-binding 57 80 IPR022755 -
Seca10g05279 505 SUPERFAMILY beta-beta-alpha zinc fingers 58 154 IPR036236 -
Seca10g05279 505 MobiDBLite consensus disorder prediction 472 505 - -
Seca10g05279 505 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Seca10g05279 505 Gene3D Classic Zinc Finger 112 190 - -
Seca10g05279 505 MobiDBLite consensus disorder prediction 1 55 - -
Seca10g05279 505 MobiDBLite consensus disorder prediction 476 491 - -
Seca10g05279 505 Gene3D Classic Zinc Finger 58 102 - -
Seca10g05279 505 SMART c2h2final6 134 154 IPR013087 -
Seca10g05279 505 SMART c2h2final6 58 80 IPR013087 -
Seca10g05279 505 SMART c2h2final6 99 129 IPR013087 -
Seca10g05279 505 MobiDBLite consensus disorder prediction 13 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05279 Seca-Chr10 120679739 120684107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05279 57 466 C2H2 Transcription Factor Family AT2G02080 44.619 1.07e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g05279 zf-C2H2_jaz 2.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05279 K25870 - gmx:100807789 441.425