Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05277 ATGGCTTCTGCTTCCTCATCCACACCTTTCTTGGAAATCAGACAAGAAAATCAGATGACACAACACCAATCTTCCACAGCTGCTTCCTCAACAACTGCTGCTCCACCTGGTGTAGTGCCTCCAAAGAAAAAGAGGAATCAACCTGGAACTCCATGCAAGTTTATATGTGAAGTGTGCAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTCCCTTGGAAGCTAAAGCAGAAAACTACAAAAGAGCCAAAGAGAAAGGTTTATCTCTGCCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGAATCAAAAAACACTATTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCCCATTCTAAGACTTGTGGCACTAGGGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGATAGTTTTATCACTCATAGGGCCTTTTGTGATGCATTAGCTCATGAGAGTGCAAGACACCCTTCCAACCTGAACCCTTTGGGAACTCCTCATCTCTATGGCACCACAAACCACATGACCTTAGGCCTATCCCAACTTCAAAACCATAACAACAACCCCCAAGCAGCCACCAACACCAACAACAGCATCTTAAGCCTAGGCAACACTGCACCACCAAAATATCATGAACACTTAATCTCACCTATGCATCAATCACCATTTGGCACACACTCATCATCCCAATCACCAGCTTTCTTCATAACTGACCCAAATCAAGGATTTCATCATCAAGACCTCCAATCTCCACAACAACAAGGAGGACAATTATTCTCAAACAAGCAACTGCATGGCCTCATGCAACTTCCTGATCTTCAAGGAACCACAACAAATAATAACACCACCACTACTACTTCTGCATTCAACCTCAGCTTCTTCCCAAATAGCAATGATCATCAATTCAACAACATAACTAGCCAAGGAAGTGCAACACTCTACAGTACTAATAACACTGTTGGTGGTGGTGGTGGTTCAGGTTTGTCTTCACTCTTTGTGAATTCAGAGAACATGTCCCCACACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACAACAACAACAACCAACAATGCAGCTTCAGCTTCTTCTCTACTAAGAGGAATGCAGGGTAGTGGTGGTTCTTCCTCAACCAATGGTGCAGATTCTGATCATCACAGTAACCAACTCAACAATCTTGCCACCTTTGGGAATGATAATAGGGTTGATGAAAATGAGCATCACCACCATCTACGTGGGTTGATGAACTCTTTTGCCAATGGAAACACTTCAATGTTTGGCAATGTGAAAGGAGAAAACAGCAACCTTGGTGGTCAGTTTCAGGATCCAAAAAAGTTGTCACAGAATTTGGGTGGTGTGTGCTTTGGAGGATCTGATAAGTTGACTTTAGACTTTCTTGGTGTTGGAGGAATGGTGAGGAACATGAATAGTAGTAGTGGTATTAATGGTGGTGGGTTTTCACAAAGAGATCAGCAACTACACTCCATGGGTACAATGAGTTCATTGGATCCTAAAATGGAATCAACACAGGGAAACCAACCTTTTGGAAGCTCAACACTTCAATGA 1677 0.4359 MASASSSTPFLEIRQENQMTQHQSSTAASSTTAAPPGVVPPKKKRNQPGTPCKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTPHLYGTTNHMTLGLSQLQNHNNNPQAATNTNNSILSLGNTAPPKYHEHLISPMHQSPFGTHSSSQSPAFFITDPNQGFHHQDLQSPQQQGGQLFSNKQLHGLMQLPDLQGTTTNNNTTTTTSAFNLSFFPNSNDHQFNNITSQGSATLYSTNNTVGGGGGSGLSSLFVNSENMSPHMSATALLQKAAQMGSTTTTTNNAASASSLLRGMQGSGGSSSTNGADSDHHSNQLNNLATFGNDNRVDENEHHHHLRGLMNSFANGNTSMFGNVKGENSNLGGQFQDPKKLSQNLGGVCFGGSDKLTLDFLGVGGMVRNMNSSSGINGGGFSQRDQQLHSMGTMSSLDPKMESTQGNQPFGSSTLQ. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05277 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Seca10g05277 558 MobiDBLite consensus disorder prediction 1 47 - -
Seca10g05277 558 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 521 IPR031140 -
Seca10g05277 558 MobiDBLite consensus disorder prediction 535 558 - -
Seca10g05277 558 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Seca10g05277 558 MobiDBLite consensus disorder prediction 403 436 - -
Seca10g05277 558 MobiDBLite consensus disorder prediction 403 440 - -
Seca10g05277 558 Gene3D Classic Zinc Finger 54 98 - -
Seca10g05277 558 MobiDBLite consensus disorder prediction 1 33 - -
Seca10g05277 558 Pfam Zinc-finger double-stranded RNA-binding 53 76 IPR022755 -
Seca10g05277 558 SUPERFAMILY beta-beta-alpha zinc fingers 54 150 IPR036236 -
Seca10g05277 558 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Seca10g05277 558 Gene3D Classic Zinc Finger 108 187 - -
Seca10g05277 558 SMART c2h2final6 95 125 IPR013087 -
Seca10g05277 558 SMART c2h2final6 54 76 IPR013087 -
Seca10g05277 558 SMART c2h2final6 130 150 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05277 Seca-Chr10 120557649 120562458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05277 53 513 C2H2 Transcription Factor Family AT2G02080 45.935 8.96e-113 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g05277 zf-C2H2_jaz 2.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05277 K25870 - gmx:102663407 612.838