Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05276 ATGAAGCCCGAGTTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCATTCAAACCCTCCCGAGTTCTCAAGAGACCTCGCTCCTCTCCTTCTCCGCCACCGATCGAGTCCTTCGCTTTCACCTCCAATAACCGCCACAAAGCCGAGGTATCGGCTTCCAGCGACGACGACGACGGCGATTGCGTCGAAATCACGCAACACTCCGCGAGTTTTCCGGAAAGCCTCGACGACCTGGAGGATGCTGACGTGAACGACGACAAGGGCGGGGGAGGAGGTCATGCCGCAGCGAGCCGTGGCCGGCGGTTTATAATTGACGACGACGATGAAGAGGAGCACGTCGGCGGAGATAGGAACGGAGGTGCTGTGGAATTGTATGACGTAGGGTCCAGCGAGGAGGAGGAAGAGGAGGAGGTGGATGAAAGTGACGTGGTTGGTAGGGCTTTGCAAAAGTGCGCGAGAATCTCTGCGGAGTTGAAGGGCGAGCTGTACGGGTCTTCGGGGACCGCTTGCGAGAGGTATTCAGAGGTGGAATCTTCTTCAGTGAGAATCGTAACTCAGGAGGATGTTGATGTTGCATGTAGATCAGAGGATTCAGATTTTCAGCCTCTGCTCAAGCCTTATCAACTGGTTGGTGTCAATTTCTTGCTGCTGTTGTATCGGAAGGGTATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTTGGCAAAACAGTTCAGGCCATCACATATTTAACTTTGTTGAAACACTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGCCCATCCTTTTCTGTTCTTCAATATCACGGGGCTGGACGTGCAGCATACTTCAAAGAGTTGAACTCCTTGTCCAAGGCGGGATTGCCTCCCCCTTTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAGGATGATCGTAAAATCCTGAAGCGTTGGAGGTGGAGCTGTGTGCTCATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCTAACCAGCGCTTGATGTTAACAGGGACACCGCTTCAGAATGATCTACATGAGTTATGGTCATTATTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTGCTAAATGCAGAAGATAGAGATTTAATTGGTCGTATGAAGTCCATATTAGGTCCATTTATTTTGCGGCGTCTGAAATCTGATGTGATGCAGCAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTGTAATGGAAAAACAACAGGAACATGCTTACAAGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGGATAGCAAAATGTTCTGAGCTTAACTCAAAAAATGTTCTTGAAGTTATTCCTCGACGACAAATAAATAACTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGCTGATAAGGAGAATTTATAATGATGAGGATGTCATTCGCTTCGCTAGGAAGCTACATCAGATAGGTGCTTTTGGCTTTGAGTGTACTTTTGACAGAGTTAAAGAGGAACTTAAAAGTTACAATGACTTTTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGGATCCTTTCAGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTAGCAGAACTTCTTCCTTCACTAAAGAAGAGTGGTCATCGTGTCTTGATCTTTAGTCAGTGGACATCAATGCTTGACATATTGGAATGGACTTTGGATGTCATTGGGTTGACCTATAAACGGCTCGATGGAAGTACGCAGGTAGCGGAGAGGCAAACAATAGTTGATACATTCAATAATGATCCTTCAATATTTGCATGCTTGCTTTCTACGAGAGCTGGTGGACAAGGCTTAAACTTAACAGGAGCTGATACTGTTGTAATTCATGATATGGATTTTAACCCACAGATTGATAGACAAGCAGAGGATCGTTGTCATCGAATTGGTCAAACAAAGCCTGTAACCATATATCGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGTATTAGATGCTGCTGTTCTCGAGTCCATGGAGGAAATTACTGAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTGTCCGCAATTTTGTTGAGTTAA 2265 0.4486 MKPELYEISDDEWENHSFKPSRVLKRPRSSPSPPPIESFAFTSNNRHKAEVSASSDDDDGDCVEITQHSASFPESLDDLEDADVNDDKGGGGGHAAASRGRRFIIDDDDEEEHVGGDRNGGAVELYDVGSSEEEEEEEVDESDVVGRALQKCARISAELKGELYGSSGTACERYSEVESSSVRIVTQEDVDVACRSEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDSGPHLIVCPASVLENWERELKRWCPSFSVLQYHGAGRAAYFKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVVMEKQQEHAYKEAIEEYRAVSQARIAKCSELNSKNVLEVIPRRQINNYFVQFRKIANHPLLIRRIYNDEDVIRFARKLHQIGAFGFECTFDRVKEELKSYNDFSIHRLLLHYGVNDRKGILSDKHVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDILEWTLDVIGLTYKRLDGSTQVAERQTIVDTFNNDPSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEITEGDMPEKTMGEILSAILLS. 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05276 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 431 IPR027417 -
Seca10g05276 754 SMART ultradead3 201 406 IPR014001 -
Seca10g05276 754 SMART helicmild6 610 693 IPR001650 -
Seca10g05276 754 Gene3D - 564 749 IPR027417 -
Seca10g05276 754 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 584 751 IPR001650 -
Seca10g05276 754 Pfam Helicase conserved C-terminal domain 581 693 IPR001650 -
Seca10g05276 754 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 396 IPR014001 -
Seca10g05276 754 CDD SF2_C_SNF 571 704 - -
Seca10g05276 754 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 736 IPR027417 -
Seca10g05276 754 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g05276 754 Pfam SNF2-related domain 225 511 IPR000330 GO:0005524|GO:0140658
Seca10g05276 754 MobiDBLite consensus disorder prediction 1 100 - -
Seca10g05276 754 FunFam Protein CHROMATIN REMODELING 19 isoform A 176 454 - -
Seca10g05276 754 Gene3D - 205 440 IPR038718 -
Seca10g05276 754 MobiDBLite consensus disorder prediction 35 49 - -
Seca10g05276 754 Gene3D - 441 516 IPR027417 -
Seca10g05276 754 PANTHER SNF2/RAD54 HELICASE FAMILY 131 730 - -
Seca10g05276 754 CDD DEXHc_Snf 205 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05276 Seca-Chr10 120465532 120479090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05276 226 732 RAD5 or RAD16-like Gene Family AT5G22750 27.157 1.00e-45 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca10g05276 SNF2_N 2.8e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05276 K14439 - gmx:100806323 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05276 10 120465532 120479090 Seca10g05276 10 120465532 120479090 ECH