LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g05273	ATGGGGAGGATCAAACCTCAAGCTCTGCTAGTGCAAAGCAAAAGGAAGAAGGGGCCTTATCGCATAACTTCAACGGCTATTATATTTTATACATTGATTCTTGTCATATTTGTGTTTTTCCTGTTTGCTACACACAGAGATTGGTCCAATAGGACAAGATTTCAACCAGAGAACCACATATCAGTGTTGGAGGATGAAAATACTTCTGTGGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTTTAATCACCTCCAAAGGCTCTATTATAATAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGTCAAAAGGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTCATGAGAAAGGGCCAGGAGCTACTGAAGATTGGAACCTGAGAGGAAAGAAATATACAAGGTTTTCTTATTCTTTGGTTCTTATGATTTGGTGTTTATGA	495	0.3838	MGRIKPQALLVQSKRKKGPYRITSTAIIFYTLILVIFVFFLFATHRDWSNRTRFQPENHISVLEDENTSVESKKSDLPGYAVLITSKGSIIIELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHEKGPGATEDWNLRGKKYTRFSYSLVLMIWCL.	165

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g05273	164	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	88	157	IPR002130	GO:0000413\|GO:0003755
	Seca10g05273	164	SUPERFAMILY	Cyclophilin-like	76	141	IPR029000	-
	Seca10g05273	164	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4	1	153	-	-
	Seca10g05273	164	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	83	140	IPR002130	GO:0000413\|GO:0003755
	Seca10g05273	164	Gene3D	-	59	155	IPR029000	-

Showing 1 to 5 of 5 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g05273	Seca-Chr10	120357993	120364150	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g05273	79	138	U-box Gene Family	AT5G67530	38.333	1.27e-10	57.0

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g05273	-		-	gmx:100796043	254.218

Showing 1 to 1 of 1 entries