Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05273 ATGGGGAGGATCAAACCTCAAGCTCTGCTAGTGCAAAGCAAAAGGAAGAAGGGGCCTTATCGCATAACTTCAACGGCTATTATATTTTATACATTGATTCTTGTCATATTTGTGTTTTTCCTGTTTGCTACACACAGAGATTGGTCCAATAGGACAAGATTTCAACCAGAGAACCACATATCAGTGTTGGAGGATGAAAATACTTCTGTGGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTTTAATCACCTCCAAAGGCTCTATTATAATAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGTCAAAAGGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTCATGAGAAAGGGCCAGGAGCTACTGAAGATTGGAACCTGAGAGGAAAGAAATATACAAGGTTTTCTTATTCTTTGGTTCTTATGATTTGGTGTTTATGA 495 0.3838 MGRIKPQALLVQSKRKKGPYRITSTAIIFYTLILVIFVFFLFATHRDWSNRTRFQPENHISVLEDENTSVESKKSDLPGYAVLITSKGSIIIELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHEKGPGATEDWNLRGKKYTRFSYSLVLMIWCL. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05273 164 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 88 157 IPR002130 GO:0000413|GO:0003755
Seca10g05273 164 SUPERFAMILY Cyclophilin-like 76 141 IPR029000 -
Seca10g05273 164 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 153 - -
Seca10g05273 164 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 83 140 IPR002130 GO:0000413|GO:0003755
Seca10g05273 164 Gene3D - 59 155 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05273 Seca-Chr10 120357993 120364150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05273 79 138 U-box Gene Family AT5G67530 38.333 1.27e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05273 - - gmx:100796043 254.218