Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05272 ATGAAAGAGAGTTTGGGCCTCATGTGCAGGGTAACAGCGTTACTGGTATTCTTCTTGCTGCTCCGGCAAAGTAGTAGTACCGTTGAGGAAGATCAGGCTTGTTCCCCTTCTTCCTGTGGCAAAATCTCCAACATAAGCTATCCATTTAGATTAAAAGATGATCCAGAACGCTGTGGGAACAGCAGTTACGAGCTAGCTTGTGAAAATAATGTGACTGTGTTATACTTATACTCGGGAAGATTTTATGTTGAGGCCATCAATTACAATAATTTCACAATCCGGCTGGTTGATCCTGGAATTCAACAACAATATAACTGCTCCTCCATTCCTCGCTATTTCTTGTCTCAATCTAATTGCAGTGATACTTATAGCAATTACATCAATTATTACAGGGATCCATACCAAGCCGGACAAAAAAGACGAGATAATCAGCTGCTTCTTTTCCAGCATATAGTATACTTGAACTGTACCAATCCAGTGAGTAACAATCCGAAATATGTGGACACTGCTTCCTGTATCAATTGGCGCTCCAAATCCAAAGGGCATATTTACGCTATTGCTGGCGACTTATTGGCTGAGGACTTTCAAGTTGATTGTCATGTGAAGCTGGTTACTCCCACATCTAATTTGGACAGATCAAATAAATTTTCTTACCCTTTCATGCACAGAGCGCTACTCTATGGATTTGAGATTTCATGGATGGGTCTTCCCTGTCAGGATCAGGACTGTCGAGGAGATTCAAACTTATGCATCTACGACTCTTCCAGCGAGAAACTTGAATGTTCGCTCCACCACTGCCGTAGTCTTTTGCTGGGATTTCATTTGGACGTTTGTGGGATATGGTCTCAGCTATATAGTAGAGTGGTTATTTGTGTGGTACATTACCTTACAGGACTGCTTGAACTAATAAAAGGACCAAACCCAAACTATGAAGGTTACCTCAACCCCAAGTATAAATTAGGATTGGTGACAGGACACTATGTTCTACCATCATTCTGGGCAGCCAGATTTCTGTTTGGCGTGACATTATATGTTGCGTTTTTTATATACAAATGGAGAAAAAGGCATTTATCAATTTATGAAAATATTGAAATATATCTACAACAAAATAGCATGATGCCCATCAGATACTCATACAAAGAAATTAAGGTCATGACTAAAGGTTTCAAAGACAAGTTGGGTGAAGGAGGCTTTGGCTCTGTTTTCAAGGGGAACCTGCGTAGTGGGCCTTGTGTTGCAATAAAGATGTTGAGCAAATCCAAAGGTAATGGTCAAGACTTTATTAGTGAAGTAGCAACCATTGGAAGGATACATCATTTGAATGTAGTACAATTAATTGGATTTTGTGTGGAAGGATCTAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAGTTCATTTTCTCTAAAGAAGGAAGTATACATTTAAGCTATGACAACATATTTGATATATCAATTGGAGTAGCTCATGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTCTACATTTTGATATCAAACCCCACAACATCCTTCTTGATGAGAACTTCACTCCAAAGGTCTCTGATTTTGGATTGGCAAAGTTGTATTCTGTGGATAATAGCATTGTCACAATGACTGCAGCAAGAGGAACAATTGGGTACATGGCTCCAGAATTGTTCTACAAAAATTTTGGAGGAGTGACCTATAAGGCTGATGTCTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGCAAGAGGAAAAACTTGAATCCCCATGTTGAGCATTCTAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGGAAAAGAGGAAGAGATTGAGATGGAAGATGTCACGGAAGAGGAAAAGAAAATGGTGAAGAAGATGATTATAGTTGCACTTTGGTGTATACAATTGAAGCCAGATGATCGACCCTCCATGAGGAAAGTAGTGGAAATGCTTGAAGGAGATGTTGAAAGCCTTGAAATGCCTCCAAAGCCTTCTCTGTATCCACATGAAACGATTACAACAGGGGATCAAAGCATCAGCTCTGAGCAAACAACATCGAGTGACAACATTAGTTCTTCTGGTGATCCTGTGGAAATTGGAACTAATCCTTTGGTAGAGAATACTCCTTGA 2148 0.3971 MKESLGLMCRVTALLVFFLLLRQSSSTVEEDQACSPSSCGKISNISYPFRLKDDPERCGNSSYELACENNVTVLYLYSGRFYVEAINYNNFTIRLVDPGIQQQYNCSSIPRYFLSQSNCSDTYSNYINYYRDPYQAGQKRRDNQLLLFQHIVYLNCTNPVSNNPKYVDTASCINWRSKSKGHIYAIAGDLLAEDFQVDCHVKLVTPTSNLDRSNKFSYPFMHRALLYGFEISWMGLPCQDQDCRGDSNLCIYDSSSEKLECSLHHCRSLLLGFHLDVCGIWSQLYSRVVICVVHYLTGLLELIKGPNPNYEGYLNPKYKLGLVTGHYVLPSFWAARFLFGVTLYVAFFIYKWRKRHLSIYENIEIYLQQNSMMPIRYSYKEIKVMTKGFKDKLGEGGFGSVFKGNLRSGPCVAIKMLSKSKGNGQDFISEVATIGRIHHLNVVQLIGFCVEGSKRALVYEFMPNGSLDKFIFSKEGSIHLSYDNIFDISIGVAHGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYSVDNSIVTMTAARGTIGYMAPELFYKNFGGVTYKADVYSFGMLLMEMASKRKNLNPHVEHSSQLYFPFWIYDQLGKEEEIEMEDVTEEEKKMVKKMIIVALWCIQLKPDDRPSMRKVVEMLEGDVESLEMPPKPSLYPHETITTGDQSISSEQTTSSDNISSSGDPVEIGTNPLVENTP. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05272 715 FunFam serine/threonine-protein kinase PBS1-like 358 461 - -
Seca10g05272 715 MobiDBLite consensus disorder prediction 661 715 - -
Seca10g05272 715 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Seca10g05272 715 Gene3D Transferase(Phosphotransferase) domain 1 462 672 - -
Seca10g05272 715 PANTHER RUST RESISTANCE KINASE LR10-RELATED 360 684 IPR045874 GO:0004672
Seca10g05272 715 ProSiteProfiles Protein kinase domain profile. 387 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05272 715 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Seca10g05272 715 FunFam PR5-like receptor kinase 462 669 - -
Seca10g05272 715 SMART serkin_6 387 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05272 715 MobiDBLite consensus disorder prediction 676 715 - -
Seca10g05272 715 SUPERFAMILY Protein kinase-like (PK-like) 370 658 IPR011009 -
Seca10g05272 715 Pfam Protein tyrosine and serine/threonine kinase 389 657 IPR001245 GO:0004672|GO:0006468
Seca10g05272 715 CDD STKc_IRAK 393 659 - -
Seca10g05272 715 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Seca10g05272 715 Gene3D Phosphorylase Kinase; domain 1 361 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05272 Seca-Chr10 120345789 120355021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05272 361 691 Receptor kinase-like Gene Family AT4G18250 51.176 8.13e-109 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g05272 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05272 - - gmx:100305367 915.605