Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05271 ATGGCAGAGTCTCTCATGAGTCATTCCATATTGATCACTCTATTTCTCCTCCTTACCCAAACTGCCACCGGTCATAACGAGTACGGGGACTCATCTTGCGGGCTTTACCAACCGCTTATTCGATTCCCCTTCCAACTTGTCAAGGGGACCAAAGATCCATGTGTTTATCCTGAGTTTTGCCTATCTTGTACTCAAAATGATAACACCCTGTTTTTGCTCCCTACCACTGCAGGTCCAATTAAATTCCATGTCAGTTCCATAAACTACAAATCACAGGAAATTTACTTGTCTGACCCTGAAAATTGCCTTCCAAACAAGTTTCTAAAACTCAAAAATTCATCATTTCAACCATACAGATTTGGTTCAGCACCAGAAAGAAAGATCATATTCTTCAACTGCTCTTCAATTGGGTACCGACACCTAAGAAACTACGAGCAGTCATCCCGAGCAGATTCACAAGATATGATTTCATGTCCAATTTATGCTTCTGATTTCGACGACAGTGTCCTAGCAAACGACCTAACATATTGTACCAAAATGTTCGATGTCATTACGTCAGTAGATGCACTCGAACTTCACTATAATGACTTGACCTTGCTGTGGACCAAACCAAATTGCACTCAGTGCGAAGCAAAAGGCAATAGATGTAAATGGAAGAACAATAGCACAGAAGGTGACATTGAATGTTTTGACTACAAACGCAAACACAAAACCATCCATATTCCAAAGTCTTTTATTTTCGTTGCTACAGGTTCAATTACTTTGGGGATAGTCTGCATGGCATTCTTCAAGATCTACCTCTATTTTAGAAAGAAAGAAGAAGATCAAGCAAGAGTGGAGAAGTTCTTAGAGGATTACAGGGCACAAAAGCCTGCTAGATTTTCCTATGCTGATATCAAAAGAATCACGAGTGGTTTCAAGGAAAAGCTAGGGGAAGGAGCTCACGGAACAGTATTTAAAGGAAAACTCTCCAATGAGATTCTTGTTGCTGTGAAGATGCTCAATTATAATACAAAGGGAGAAGGGAAAGAGTTCATCAATGAAGTGGGAATTATGGGCAAAATCCACCACATCAATGTGGTTCGTTTGATTGGTTTCTGTGCAGAAGGAGTCCATCGTGCTCTTGTCTACAATTTGTTTCTAAATGGTTCACTACAAAACTTCATATTTCCACCAGATAACAAGGAGAATTTCCTTGGCTGGGAGAAGTTGCAACAAATTGGCATTGGCATAGCTAAAGGAATTGAGTATCTTCATCAAGGTTGTAATCATCCAATCCTTCACTTTGACATTAACCCTCACAATGTGTTACTAGATGACAACTTCACTCCTAAAATTTCTGATTTTGGTCTAGCCAAGTTATGTTCCAAGAATCTTAGTGTTGTGTCCATGACAGCTGCTAGGGGAACATTAGGATACATGGCACCTGAAGTCTTCTCAAGAAACTTTGGGAATGTATCAAAAAAGTCTGATATTTATAGTTATGGGATGTTGTTGCTAGAAATGGTTGGAGGAAGGAAGAATATAGACATGTCATCTGCTGAGATGGTCCAAGTTCTATACCCAGAATGGATCCATAACTTATTGGAAGGAGACATACATGTTGATATTGAGGATGAAGATGAAGTTAAAATTGCAAAGAAACTTGCAATTGTGGGACTTTGGTGCATTCAGTGGCAACCAGTGAACCGTCCATCCATACAAACTGTTGTTCAAATGCTGGAAACTGGAGGTGAAGATCATTTAACCTTGCCTCCTAATCCATTTCACTCAAATATTTCTAGTGCTACTAGTCAACTCACTTTGGAAAGACGGCCTTTCCAGTTGGAAGTGATTCAAGAATAA 1845 0.3962 MAESLMSHSILITLFLLLTQTATGHNEYGDSSCGLYQPLIRFPFQLVKGTKDPCVYPEFCLSCTQNDNTLFLLPTTAGPIKFHVSSINYKSQEIYLSDPENCLPNKFLKLKNSSFQPYRFGSAPERKIIFFNCSSIGYRHLRNYEQSSRADSQDMISCPIYASDFDDSVLANDLTYCTKMFDVITSVDALELHYNDLTLLWTKPNCTQCEAKGNRCKWKNNSTEGDIECFDYKRKHKTIHIPKSFIFVATGSITLGIVCMAFFKIYLYFRKKEEDQARVEKFLEDYRAQKPARFSYADIKRITSGFKEKLGEGAHGTVFKGKLSNEILVAVKMLNYNTKGEGKEFINEVGIMGKIHHINVVRLIGFCAEGVHRALVYNLFLNGSLQNFIFPPDNKENFLGWEKLQQIGIGIAKGIEYLHQGCNHPILHFDINPHNVLLDDNFTPKISDFGLAKLCSKNLSVVSMTAARGTLGYMAPEVFSRNFGNVSKKSDIYSYGMLLLEMVGGRKNIDMSSAEMVQVLYPEWIHNLLEGDIHVDIEDEDEVKIAKKLAIVGLWCIQWQPVNRPSIQTVVQMLETGGEDHLTLPPNPFHSNISSATSQLTLERRPFQLEVIQE. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05271 614 Pfam Wall-associated receptor kinase galacturonan-binding 31 98 IPR025287 GO:0030247
Seca10g05271 614 Gene3D Transferase(Phosphotransferase) domain 1 381 582 - -
Seca10g05271 614 SUPERFAMILY Protein kinase-like (PK-like) 287 575 IPR011009 -
Seca10g05271 614 FunFam PR5-like receptor kinase 380 584 - -
Seca10g05271 614 PANTHER RUST RESISTANCE KINASE LR10-RELATED 274 594 IPR045874 GO:0004672
Seca10g05271 614 Gene3D Phosphorylase Kinase; domain 1 276 379 - -
Seca10g05271 614 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Seca10g05271 614 Pfam Protein kinase domain 307 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05271 614 ProSiteProfiles Protein kinase domain profile. 304 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g05271 614 FunFam serine/threonine-protein kinase PBS1-like 271 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05271 Seca-Chr10 120336701 120339895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05271 6 599 Receptor kinase-like Gene Family AT1G66910 32.827 5.85e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g05271 Pkinase 8.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05271 - - gmx:100813531 862.448