Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05270 ATGGATTCTCTTCCCTCTTCTGAAAACCCGAACCCAACCTTCCCTTCTGCACCACCTGGAATTCCAACCCCAATAGTAACCCCAAAGCTTGAACCTTCAGACGAATGGGCCGCACCAAGCCCACCCGGTTTCTCAAACGGGTCCCACCAACTCGACCTCAACCTCTTCTGCAACGAAACCCTAGCCGGTGGCTCCTCCGACCACCACACTGCCACCACCAACAACGACAATTTGTACTCTGAGTTCAACCGAGTCTCCGAGCTCTTTCGAACCGCTATGGGCCTTCAGCAATCCCAAAACGACACCGTTCCAGACCCGGATTCACGCGCAATCGTTCCGGTTCCACCGCCGCCGGAGAACAACAACGGCACTGACGGAAACCCTTCGTCGGTGGCCGTCGTGACGCCGCGGCAACGGAAATGGAAGGAGCTGGTGAGGGTGACGGATGTCGGCGTGATGGAGCAGCGGCACTTCCGCGACGTGGTTCGGAGGACTCGAATGGTGTACGATTCTCTTCGTGTGTTAGCGGCGGCAGAAGAAGAGGGAAGGATGGATGTGCGGAGGGTGAGGAGCGATTTGAGGGCTTCAGCAGTGATGAGAAACTGCGGGTTGTGGCTGAATCGTGATAAAAGGATAGTTGGGGCAATTCCAGGGGTTTGCATTGGTGATGTGTTTCTTTACAGGATGGAATTGTGTGTGGTTGGTTTGCACGGTCAACCACAGGCTGGGATTGATTATCTACCTGCTAGCATGAGTTCAAATGGTGAACCAATTGCCACAAGTGTTATAGTCTCTGGTGGGTATGAGGATGATTTGGATGAGGGTGATGTGATCATCTATTCTGGTCATGGTGGCCAGGACAAGCATTCAAGGCAGGTTTTTCATCAGAAGTTGGAAGGAGGGAACCTTGCTATGGAGAGAAGCATGCATTATGGGGTTGAAGTGAGGGTTATTCGAGGTGTTCGGTGTGAGGGGACTGCCGCTGCTTCTGGTAAGGTCTATGTTTATGATGGGTTGTATAGGATTCTTGAGTGTTGGTTTGATGTTGGCAAGTCTGGTTTTGGTGTTTATAAGTATAAGCTGTGGAGGATTGATGGGCAGGCTAAGATGGGTAGTATGGTTATGAAGGAAGCTCTTATGCTTAGGAGAGATCCGTTGAGTTTTAAACCAATGTGCTGCCTGTCTCTTGATGTTTCCAACAGGAAGGAGAATGTTCCCGTGAGGCTTTTCAATGACATTGATCGGAATCATGATCCTCTTTGTTATGAGTACCTTGCAAAGACTACTTTTCCGCAGTTTGTGTTTCATCAGAGTGGGAGGGCCACAGGTTGTGAGTGCGTGGACGGTTGTATGGATGGATGCTTTTGTGCCATGAAGAATGGAGGAGAGTTTCCTTATAGTCAAAATGGGATTCTCTTGAGAGGGAAGCCTATAATTTTTGAATGCGGCCCTTTTTGTGGCTGTCCTCCTCATTGTCGGAACCGTGTCACGCAAAAAGGGCTGAAAAATAGGTTGGAAGTATTTAGATCAAGGGAGACTGGTTGGGGAGTTAGGTCTTTGGATCTTATTCAAGCTGGAGCTTTTATCTGTGAGTACACTGGGGTTGTTCTGACTAGGGAGCAAGCACAAATTTTGACCATGAATGGTGATACATTGATATATCCAAATCGATTTACTGATAGGTGGGCAGAATGGGGGGATTTGTCTTTGATAGACTCCAATTATGTCCGGCCTTCATATCCATCAATTCCTCCTTTAGATTTTTCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATTAGTCATAGTTCAACTCCTAATGTCTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTTAGCCTTGATTATGGGGTAGCTGATGAGTTGACAGGCAAGCTCTCTATATGGGTCTTGAACCAGTCAAATGTTTTCAACGAACAGCGACCACCATGCCCCTTCGCTTGCCACACCCACTGCCCAACCAACCACCCTCGCAAACGTCTGGCTACCACTATCCGATGTCCTCGGCGATTTCCTGGTGACTTATGGCAGGACGCAACAGCCCCTTTTTCTTAG 2142 0.4841 MDSLPSSENPNPTFPSAPPGIPTPIVTPKLEPSDEWAAPSPPGFSNGSHQLDLNLFCNETLAGGSSDHHTATTNNDNLYSEFNRVSELFRTAMGLQQSQNDTVPDPDSRAIVPVPPPPENNNGTDGNPSSVAVVTPRQRKWKELVRVTDVGVMEQRHFRDVVRRTRMVYDSLRVLAAAEEEGRMDVRRVRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDLDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGVEVRVIRGVRCEGTAAASGKVYVYDGLYRILECWFDVGKSGFGVYKYKLWRIDGQAKMGSMVMKEALMLRRDPLSFKPMCCLSLDVSNRKENVPVRLFNDIDRNHDPLCYEYLAKTTFPQFVFHQSGRATGCECVDGCMDGCFCAMKNGGEFPYSQNGILLRGKPIIFECGPFCGCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQILTMNGDTLIYPNRFTDRWAEWGDLSLIDSNYVRPSYPSIPPLDFSMDVSRMRNVACYISHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADELTGKLSIWVLNQSNVFNEQRPPCPFACHTHCPTNHPRKRLATTIRCPRRFPGDLWQDATAPFS. 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05270 713 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 58 691 IPR025794 GO:0016571
Seca10g05270 713 SMART set_7 503 652 IPR001214 GO:0005515
Seca10g05270 713 MobiDBLite consensus disorder prediction 1 47 - -
Seca10g05270 713 Pfam SAD/SRA domain 213 367 IPR003105 -
Seca10g05270 713 Gene3D - 211 371 IPR036987 -
Seca10g05270 713 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 84 672 - -
Seca10g05270 713 MobiDBLite consensus disorder prediction 11 26 - -
Seca10g05270 713 SMART G9a_1 209 367 IPR003105 -
Seca10g05270 713 MobiDBLite consensus disorder prediction 97 135 - -
Seca10g05270 713 SUPERFAMILY SET domain 387 647 IPR046341 -
Seca10g05270 713 SUPERFAMILY PUA domain-like 195 377 IPR015947 -
Seca10g05270 713 ProSiteProfiles SET domain profile. 503 646 IPR001214 GO:0005515
Seca10g05270 713 ProSiteProfiles YDG domain profile. 214 363 IPR003105 -
Seca10g05270 713 Pfam SET domain 514 646 IPR001214 GO:0005515
Seca10g05270 713 Pfam Pre-SET motif 399 495 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g05270 713 ProSiteProfiles Pre-SET domain profile. 442 500 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca10g05270 713 Gene3D SET domain 372 658 IPR046341 -
Seca10g05270 713 SMART preset_2 395 487 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05270 Seca-Chr10 120240110 120243399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05270 128 648 Su(var)3-9 homologs AT5G04940 37.381 1.57e-105 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g05270 SAD_SRA 5.5e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05270 K11420 - gmx:100795514 1055.05