Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05267 ATGTCAAACCCTATATTTCTCAAGCCTCCAGATGGCACTGGATGGAGAATATATTGGACTAAATATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCTCTTGATTACGGGCATATGGTGTTGTTTGAATACAAGGATACTTGTCATTTTGAGGTGCATATATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCATGCCAAAGATGAACAGGACAAGATTAGTGACAACTCTGTTGAAATTTTGGAAGAACTACCTCCATCTTCATGCAACAAGAGGAAGACTAAACTGAAATCACCAGTGTCATGTCCTCAACCACATAAGAAATTGAGAACTAGCACAAGTGGAGATGTTGAAAGAAGCTCCAAATTGCAAAACATGCCTGAACATGTACAAATTAAAGGTAATCAGTCTCAAGGGACAAACTTTGAGATGCACACATTTGCATCTCTGTCAAAGGATGTGGGTGCTACCACTGAATGCCTAAAGCTGGAGCATTCAATTTGTAAAATTAATGAAGCTTTAAACAGAGCTGCAACCTTCAGATCTAAAAATCCCTCTTTCATGGTTGTCATGAAACCTTCCTATTTTCATAAATTTTACTTGCATGTCCCATCACAATTTGTAGGAAAATATTTGAAGAAAAAGCAAAGTGATATCCTCCTTCAGGTCTTGGAGGGGAGAACTTGGCATGTTAGTTATAGTTTCGGCAGAATTAAAGCTGGATGGAAGAAATTTTCATCAGATAACAATTTGAAAGTGGGGGATGTTTGTCTTTTTGAGTTGACCAAAAAACGACCCCTTTGTTTCAAAGTTTTGATCTTTAGCATTGGGGAAGAACTACATTCCCCTCTACCACAAGAGGATATGGGTGTTACCACTGAATGCCTAAAAGTGGAGCAGTTAACTTCTGAAATTACTAAAGCTGTAATGGGAGTCACAAACTTCAGATCTAAAAATCCCTCTTTCATGGTTGTCATAAAACCTGCCTATCTTCGTCATTACATGAATGTCCCATCAGAGTTTATAGCAAAATATTTGAAGAAAAAGCGAAGTGATATCCTCCTTCAGGTATTGAACAGGAGAACTTGGCTCGTTAGTTATACGTTTGGCAAAATTACTACTGGATGGAAGAAATTTGCATCAGGTTTAATCTTTCGAGTTGGGGAAGAAATACATTCCCCTCCACCACAAGAATCAATTCAAGGCGATGGAGTCAATTGGCGAGACCTTGGGAGAATCCCACACATTGAAAGTAAAACTATTATTATCAGTGGAGGTGGGAAGGCAACTCAACGAACTTCACGGCTGATTACTAGTCCCAACTCCTTCACAAATGGAGCTCTTGAAGAAGCTAACAAATTCACCTCACAAAATCCCTTTTTCACAGTCATTATAAAGCCAGATTTTCATGAGGATTATAGACCGCGTGTACCAAATGCCTTCGTCAGAAACTACTTCAATAACAAGCAGCAGATGGTGATGTTACAATACGGAAATAAACTGTGGGATGTGAAGTTGATCTGTTACCCACATGCAGGTTCAAGCAAGTTTTCTAGAGGTTGGACCCTATTTGCCAGAGAAAGTAAATTGTTAGGTGGAGATGTTTGTGTCTTTGAGCTCATAAACCGGGAATATCACATGCTTCATGTTCATATTTTCAGAGGCCACTATTAG 1701 0.3862 MSNPIFLKPPDGTGWRIYWTKYDGDIWFQKGWKEFATYYSLDYGHMVLFEYKDTCHFEVHIFDKSTLEIQYPFHAKDEQDKISDNSVEILEELPPSSCNKRKTKLKSPVSCPQPHKKLRTSTSGDVERSSKLQNMPEHVQIKGNQSQGTNFEMHTFASLSKDVGATTECLKLEHSICKINEALNRAATFRSKNPSFMVVMKPSYFHKFYLHVPSQFVGKYLKKKQSDILLQVLEGRTWHVSYSFGRIKAGWKKFSSDNNLKVGDVCLFELTKKRPLCFKVLIFSIGEELHSPLPQEDMGVTTECLKVEQLTSEITKAVMGVTNFRSKNPSFMVVIKPAYLRHYMNVPSEFIAKYLKKKRSDILLQVLNRRTWLVSYTFGKITTGWKKFASGLIFRVGEEIHSPPPQESIQGDGVNWRDLGRIPHIESKTIIISGGGKATQRTSRLITSPNSFTNGALEEANKFTSQNPFFTVIIKPDFHEDYRPRVPNAFVRNYFNNKQQMVMLQYGNKLWDVKLICYPHAGSSKFSRGWTLFARESKLLGGDVCVFELINREYHMLHVHIFRGHY. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05267 566 SUPERFAMILY DNA-binding pseudobarrel domain 463 563 IPR015300 -
Seca10g05267 566 CDD B3_DNA 329 390 IPR003340 GO:0003677
Seca10g05267 566 MobiDBLite consensus disorder prediction 114 130 - -
Seca10g05267 566 Gene3D - 1 66 IPR015300 -
Seca10g05267 566 CDD B3_DNA 194 284 IPR003340 GO:0003677
Seca10g05267 566 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Seca10g05267 566 SMART B3_2 196 286 IPR003340 GO:0003677
Seca10g05267 566 SMART B3_2 469 565 IPR003340 GO:0003677
Seca10g05267 566 SMART B3_2 331 406 IPR003340 GO:0003677
Seca10g05267 566 Pfam B3 DNA binding domain 469 564 IPR003340 GO:0003677
Seca10g05267 566 Pfam B3 DNA binding domain 5 64 IPR003340 GO:0003677
Seca10g05267 566 Pfam B3 DNA binding domain 197 281 IPR003340 GO:0003677
Seca10g05267 566 SUPERFAMILY DNA-binding pseudobarrel domain 3 65 IPR015300 -
Seca10g05267 566 Gene3D - 310 399 IPR015300 -
Seca10g05267 566 Gene3D - 451 565 IPR015300 -
Seca10g05267 566 Gene3D - 178 286 IPR015300 -
Seca10g05267 566 ProSiteProfiles B3 DNA-binding domain profile. 469 565 IPR003340 GO:0003677
Seca10g05267 566 SUPERFAMILY DNA-binding pseudobarrel domain 189 284 IPR015300 -
Seca10g05267 566 ProSiteProfiles B3 DNA-binding domain profile. 195 286 IPR003340 GO:0003677
Seca10g05267 566 MobiDBLite consensus disorder prediction 98 130 - -
Seca10g05267 566 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 456 564 IPR044837 -
Seca10g05267 566 CDD B3_DNA 2 63 IPR003340 GO:0003677
Seca10g05267 566 CDD B3_DNA 469 563 IPR003340 GO:0003677
Seca10g05267 566 SUPERFAMILY DNA-binding pseudobarrel domain 325 391 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05267 Seca-Chr10 120212462 120215965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05267 456 563 B3 DNA Binding Superfamily AT3G18990 36.937 2.95e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05267 B3 3.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05267 - - lja:Lj5g3v0508090.1 368.622