Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05266 ATGACTTGCAACAACAGAAACAACCATTCTGTTCCTTCTCTCATCCGTTTCTTTAAGATTATCACAACAACTACTCTTCAAGCTGCAAAGCTTAAGATTCCAAACGGTTTCACTAGGAAATATGGTGGTGATATGTCAAACCCAATGTATCTCAAGCCTCCTGATGGCATTGAATGGAAAGTGTATTACACTAAACATGACACTGATATTTGGCTTCAAAAGGGTTGGAAAGAGTTTGCTACACATTACTCCCTAGATCATGGCCACATGGTGTTGTTTGAATACATGGATAGTTCTGATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATACAATACCCTTTCCATGCCACTCAAGATGAACAGGACAACATTAGTGACAACTCAGTTGAAATTTTGGAAGAACTACCTCCATCTTCATGCAAGAAGAGGAAGACTAAAAAGAAATCACCAATGTCATGTCCTCAACCATGTCAGAAATTGAGAACTGGCACAGGTGATGTTAGAAGAAGCCACAAAAAGCAAAACTTGCCTAAACATGTCCAAATTAAAGAGGATATGGGTGGTACCACTGAATGCCTTGGAGTGGAAAAGTTAACTTGTAAAGTTAATGAAGCTTTAAAGAGAGCCACAGCCTTCAGATCTGAAAATCCCTCTTTCATGGTTGAAATGAAACCTTCTTATGTTGCACATAACTTGCATGTGCCATCACAATTTGCAGAAATATATTTGGGGAAAAAGCAAAGGAATATCCTCCTTCAGATGTTGGATGGGAGAACATGGCCATGTAATTACATTAACAGCCAAATTAGTGCTGGATGGAAGAAATTTGCATCAGATAATAATTTGAAATTGGGGGATGTTTGTGTTTTTGAGTTGACCAAACGCCTGCCCCTTTCTTTCAAAGTTTCAATCTTTCGAGTTGGGGAAGAACCACATTCCCCTCCACCACAAGGTAATTCATGA 972 0.3879 MTCNNRNNHSVPSLIRFFKIITTTTLQAAKLKIPNGFTRKYGGDMSNPMYLKPPDGIEWKVYYTKHDTDIWLQKGWKEFATHYSLDHGHMVLFEYMDSSDFEVHIFDKSTLEIQYPFHATQDEQDNISDNSVEILEELPPSSCKKRKTKKKSPMSCPQPCQKLRTGTGDVRRSHKKQNLPKHVQIKEDMGGTTECLGVEKLTCKVNEALKRATAFRSENPSFMVEMKPSYVAHNLHVPSQFAEIYLGKKQRNILLQMLDGRTWPCNYINSQISAGWKKFASDNNLKLGDVCVFELTKRLPLSFKVSIFRVGEEPHSPPPQGNS. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05266 323 Pfam B3 DNA binding domain 222 309 IPR003340 GO:0003677
Seca10g05266 323 Pfam B3 DNA binding domain 17 108 IPR003340 GO:0003677
Seca10g05266 323 Gene3D - 13 110 IPR015300 -
Seca10g05266 323 MobiDBLite consensus disorder prediction 138 179 - -
Seca10g05266 323 CDD B3_DNA 16 107 IPR003340 GO:0003677
Seca10g05266 323 SUPERFAMILY DNA-binding pseudobarrel domain 215 310 IPR015300 -
Seca10g05266 323 Gene3D - 202 312 IPR015300 -
Seca10g05266 323 SMART B3_2 222 311 IPR003340 GO:0003677
Seca10g05266 323 SMART B3_2 17 109 IPR003340 GO:0003677
Seca10g05266 323 PANTHER B3 DOMAIN-CONTAINING 8 298 - -
Seca10g05266 323 ProSiteProfiles B3 DNA-binding domain profile. 220 311 IPR003340 GO:0003677
Seca10g05266 323 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Seca10g05266 323 CDD B3_DNA 220 309 IPR003340 GO:0003677
Seca10g05266 323 SUPERFAMILY DNA-binding pseudobarrel domain 13 109 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05266 Seca-Chr10 120187315 120188749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05266 17 312 B3 DNA Binding Superfamily AT3G18990 30.588 1.50e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05266 B3 1.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05266 - - lja:Lj5g3v0508090.1 377.096