Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05265 ATGACTTGTAACAGGCGAAAGAAGCGTTCTGTTCCCTCTGCTGCAAATGCAATCCGTTTCTTTAAGATTATTACAACAACAATTCTTGAAGTTGAAGCTGCAAAGCTTAAAGTTCTGTGGTCTATGCAGAAGATTCCAAACGGTTTCACTAAGAAATATGGTGGTGATATGTCAAACCCAATGTATCTCAAGCCTCCAGATGGCACTGAATGGAAAATATATTGGACTAAGCATGATTCTGATATTTGGTTTCAAAATGGTTGGAAAGAATTTGCTACAAATTACTCCTTAGATCATGGACACATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCAATTCCATGGTAGCCAAGAAAACCTTGACAAGATCAGTGATGACTCTGTTGAAATTTTGGATGAGCTGCCTCCATCTTCATGCAAGAAGACTAAACTGAAATCACCAATGTCAAGTCCTCAACCAAGTAAGAAATTGAAAACTGGCACAAGTGGAAAAGTTGAAAGAAGCCCCAAATTGCAAAACATGGGTAAACATGTCAAAATTAAAGGTAGTCAGTCTCAAGGGACAAACTTTGAGAAATCATCATTTGCATCTGACAAGGAAGAATTGGATAGTGATGGAGTCAATTGTATAGACCCTGGGAGAGTCCCGGACAATGAAGGTGAGATGGCAACTCAACGAAGTGCTCTACACCCCTTCATAAATGAAGCTCTGAAAGAAGCTAGTAAATTCACCTCGGAAAATCCCTTTTTCATAGTCTATGTAAAGCCAGATCAGGGGCACTATTACAGACCGTATGTACCAAATGCCTTCATCACAAAGTACTTCTACAAAAGGAAGCGGATTGTGAAGTTACAGTTTGGAAAGAAATTGTGGCCTATCAAGTTGCTCTATTATCCACGCGGAGCCAAGTTGTCTGGAGGTTGGTCTCTATTTGCAAGAGAAAGTAAATTGTTAGGTGGAGACGTATGTGTGTTTGAGCTCATCAATAGGGAAGATTATATGCTTGATCTTCATATTTTCAGAGACAATTGA 1086 0.3886 MTCNRRKKRSVPSAANAIRFFKIITTTILEVEAAKLKVLWSMQKIPNGFTKKYGGDMSNPMYLKPPDGTEWKIYWTKHDSDIWFQNGWKEFATNYSLDHGHMVLFEYKDTSHFEVHIFDKSTLEIQYPFQFHGSQENLDKISDDSVEILDELPPSSCKKTKLKSPMSSPQPSKKLKTGTSGKVERSPKLQNMGKHVKIKGSQSQGTNFEKSSFASDKEELDSDGVNCIDPGRVPDNEGEMATQRSALHPFINEALKEASKFTSENPFFIVYVKPDQGHYYRPYVPNAFITKYFYKRKRIVKLQFGKKLWPIKLLYYPRGAKLSGGWSLFARESKLLGGDVCVFELINREDYMLDLHIFRDN. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05265 361 CDD B3_DNA 19 119 IPR003340 GO:0003677
Seca10g05265 361 SUPERFAMILY DNA-binding pseudobarrel domain 41 121 IPR015300 -
Seca10g05265 361 Pfam B3 DNA binding domain 44 120 IPR003340 GO:0003677
Seca10g05265 361 Pfam B3 DNA binding domain 267 360 IPR003340 GO:0003677
Seca10g05265 361 MobiDBLite consensus disorder prediction 196 211 - -
Seca10g05265 361 SMART B3_2 267 361 IPR003340 GO:0003677
Seca10g05265 361 SMART B3_2 35 121 IPR003340 GO:0003677
Seca10g05265 361 Gene3D - 251 361 IPR015300 -
Seca10g05265 361 PANTHER B3 DOMAIN-CONTAINING 16 349 - -
Seca10g05265 361 MobiDBLite consensus disorder prediction 154 216 - -
Seca10g05265 361 SUPERFAMILY DNA-binding pseudobarrel domain 261 359 IPR015300 -
Seca10g05265 361 ProSiteProfiles B3 DNA-binding domain profile. 28 121 IPR003340 GO:0003677
Seca10g05265 361 ProSiteProfiles B3 DNA-binding domain profile. 267 361 IPR003340 GO:0003677
Seca10g05265 361 MobiDBLite consensus disorder prediction 160 177 - -
Seca10g05265 361 CDD B3_DNA 267 359 IPR003340 GO:0003677
Seca10g05265 361 Gene3D - 13 122 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05265 Seca-Chr10 120171235 120173453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05265 44 361 B3 DNA Binding Superfamily AT3G18990 30.931 6.70e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05265 B3 9.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05265 - - lang:109359484 337.421