Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05262 ATGTCTTCTCAAGGAATTGATCATCACAGTAATGGCGTCCACTTTTTCAAGGTTATTCTTGAAAGCACCCTTCAAACTGGAGAGCTGAAAGTGCCGGGAAGTTTTGTGAAGAGGCATTGGGAAGGAATAGCAAACCCTGTTTCTCTAAGGCTTCCAAACAGGACTCAATGGAATGTTCATTGGGCAAAGAATGATGGTGATGTTTTGTTTTGCAATGGTTGGAAGGAATTTGCAGAATACTTGTCTTTGAAAGTGTCACAGTTTTTGGTGTTTCAATATAAAGGAAAGTCTCGTTTTAATGTGATTGTATTGGGTATAAACGCATTAGAAATCAATTACCCTGCTGCTAAAGCTACTCATGATGATGATAATGAAGAAGAAGATGAAGAGGTTGATCAGAGTGATTGTTCTTTGAAAATTCTTGATGATAGTTCACCACTGAAGGGTAAAAGACTAAAATTTTCATCACCATTTTCTCAAAATCCTAAGAAGGTGAAAACCAACCCAAAAGAACATGCAGGTTCTGATAGTGGTAAGCTTATCAACAGTGGTAGTAACAAAGATCTTAAAGAGAGAATCAAAGCTTTTCATGAGAAAGTGAAGGAGAAATTCATCATTGACAATGATGAGACCTTCACATGTGCAATCCACAAAACATACACTGAGAGAGATCTCCTGATCATACCAAGCGATTTTTCTAGAGCACACCTGCAGAACATGGAAGGAAGAAAGGCTACCTTTTTTGTTGAGCAGGACAGAAGTTGGGAAGTGGAGTTTAGGGTCAATCACAGTGGGCAATTAGTATTTGGTAATGGTTGGAGGAAATTTTTGATGGACAACAATTTGAAATGGGGTGATGTCTGTGCTTTTAAGCTGAACAAATGCATACAAGTTTCATTCAAAGTTGTTATTTTTTCTTTCGAACAGGACCTAAGCACTCCCCTCTCTAAAGAGCAAGAAAGGCTTTTTCATAGGCGTTCTTCGTTCCTTAAAACCCCCGAAACTCCAAGATCAGACAACAGGTTAATGTCGAAGGAGTTCAACATCTGCATCAAGTCTTCAATGACCGTAGCGAGCATACCAATTAGCTACATAAGGAATTACAATGCACAAAATGGACAATCTGTGACGTTGCGAGTTGGGGAGAGATCATGGACTGTAATATTGCTATATTATGACTATAATTCCACTGCTAGATTCTCATCAGGTTGGCTTGATTTTGCAAGGGGTTGTGACTTGAAAGATGGTGATACTTGTATCTTTAAGATGATAGATGAGCACAATTTTGTCTTTGATGTTACAATTTTAAGAGGGGGCCACTAA 1323 0.3855 MSSQGIDHHSNGVHFFKVILESTLQTGELKVPGSFVKRHWEGIANPVSLRLPNRTQWNVHWAKNDGDVLFCNGWKEFAEYLSLKVSQFLVFQYKGKSRFNVIVLGINALEINYPAAKATHDDDNEEEDEEVDQSDCSLKILDDSSPLKGKRLKFSSPFSQNPKKVKTNPKEHAGSDSGKLINSGSNKDLKERIKAFHEKVKEKFIIDNDETFTCAIHKTYTERDLLIIPSDFSRAHLQNMEGRKATFFVEQDRSWEVEFRVNHSGQLVFGNGWRKFLMDNNLKWGDVCAFKLNKCIQVSFKVVIFSFEQDLSTPLSKEQERLFHRRSSFLKTPETPRSDNRLMSKEFNICIKSSMTVASIPISYIRNYNAQNGQSVTLRVGERSWTVILLYYDYNSTARFSSGWLDFARGCDLKDGDTCIFKMIDEHNFVFDVTILRGGH. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05262 440 Gene3D - 317 438 IPR015300 -
Seca10g05262 440 Gene3D - 187 309 IPR015300 -
Seca10g05262 440 CDD B3_DNA 14 104 IPR003340 GO:0003677
Seca10g05262 440 SUPERFAMILY DNA-binding pseudobarrel domain 353 436 IPR015300 -
Seca10g05262 440 ProSiteProfiles B3 DNA-binding domain profile. 211 308 IPR003340 GO:0003677
Seca10g05262 440 Pfam B3 DNA binding domain 15 104 IPR003340 GO:0003677
Seca10g05262 440 Pfam B3 DNA binding domain 359 437 IPR003340 GO:0003677
Seca10g05262 440 Pfam B3 DNA binding domain 215 295 IPR003340 GO:0003677
Seca10g05262 440 PANTHER B3 DOMAIN-CONTAINING 214 427 - -
Seca10g05262 440 SMART B3_2 15 107 IPR003340 GO:0003677
Seca10g05262 440 SMART B3_2 347 439 IPR003340 GO:0003677
Seca10g05262 440 SMART B3_2 216 308 IPR003340 GO:0003677
Seca10g05262 440 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Seca10g05262 440 CDD B3_DNA 359 437 IPR003340 GO:0003677
Seca10g05262 440 CDD B3_DNA 226 306 IPR003340 GO:0003677
Seca10g05262 440 MobiDBLite consensus disorder prediction 148 184 - -
Seca10g05262 440 Gene3D - 7 107 IPR015300 -
Seca10g05262 440 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Seca10g05262 440 ProSiteProfiles B3 DNA-binding domain profile. 343 439 IPR003340 GO:0003677
Seca10g05262 440 SUPERFAMILY DNA-binding pseudobarrel domain 211 306 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05262 Seca-Chr10 120110491 120113256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05262 347 437 B3 DNA Binding Superfamily AT3G18990 26.316 2.96e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05262 B3 2.2e-09 CL0405