Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05260 ATGTCTTTCCATCATGACACTAGTGCTTTTAGTTTCAAGTTTAACAAAGTAATTCAAGATCCAGATCGACAAAAGAAAGAACTCAGGATTCCCCCGGCTGTTGTGATGAAATATTGGAAAGTAATGCCAAATCCAATACTTCTCAAACTTCCAAATGGTGCTGGATGGGAAATATCATGGGAAAGTCATGATAGTGGCATTTGGCTTAAGAAAAATTGGAATAAATTTGCACAGTCTCTATCACTTGGTTATGGATATTTTTTAGTTTTCAAGTATAAAGGAGGATCAAATTTCCTTGTTGAGGTATTTCATTATAATAGTTTAGAAATAGACTATTCAAGTATAAGATGCATCAATGATGGTGAAGGTTCCAATGAACATCAAAAACAAATTGTGGAGGAGGAGGATTGTCTGGAGATTGTGGATCTATGTGAAAGACTCACACAACCTCTTAAGAAAAAGAAAGCCAACCCAAGTGAAGAATGTAAAAACTACAACAACCCACATTTTGAAGCTAACAATGCTCCATCTAAGAGGATAAGCATTAATGGCAAGAGAAAAATGAATGCAGGGGCTAACAGGGGAGACATAATTAAGGCCAAGAATTACTCATCAAAAAAAGCTGAAGTTAAAGAGATGATGGCCAAGAATTTTCATTTGGAGAACCCTTTTTTCATACTTATATTGAAGCCAAGTTATGTGCAGAGCAATATATTGGTACTAATTTTACTATATTTTAAGGGTTGGTTGGGCCAATCAACACTTATTATAAAAAAATGTTTAATATATGTTTGTGACTTGAAACAGATGGTACCATGTGAGTTTTCGAGAAAATATTTGAAGGACTTAGAAGGGATTACAATAATTCAGGTTGATGGAGATGAGAATAGGTGTGGAAATCGTGTTAGTTTCAAGTTCTGTGATCCTGAAAAACGAACTAGATTCAGCACTGGTTGGAAGCTATTTACTCACAAATATAACTTACAAGCTGGTGATTGTTGTATATTTGAGATGACTCAACAAGCACCACCACTTTCATTCAAAGTTACTATTATCAGAGCTAAAGAATTACCAAGTTTTATGCAACTGAAAGGTCATGGGAATGGAGCAAACAGAGGAAAAAACAAATATAAACAAGAGACAGGGGCGGTGAAAAAATTGGGCAATTCTCAGAGTTTTGGAAAAAGAAAAGGCAAAGGCAGTAGAGGAATTTTAAGGAGAAGCCCAAAAACAATTGTTACTAAGAATATTGAGGCAATGTTAGAACTAAATAATAATGTAGTTAAATTTTTTGTTCTTAATTATTTTTGCAGCATTGCATACCAAGATGGTTCATGGAGAGACACAGATGTAATGGAAAATTCGTGA 1368 0.345 MSFHHDTSAFSFKFNKVIQDPDRQKKELRIPPAVVMKYWKVMPNPILLKLPNGAGWEISWESHDSGIWLKKNWNKFAQSLSLGYGYFLVFKYKGGSNFLVEVFHYNSLEIDYSSIRCINDGEGSNEHQKQIVEEEDCLEIVDLCERLTQPLKKKKANPSEECKNYNNPHFEANNAPSKRISINGKRKMNAGANRGDIIKAKNYSSKKAEVKEMMAKNFHLENPFFILILKPSYVQSNILVLILLYFKGWLGQSTLIIKKCLIYVCDLKQMVPCEFSRKYLKDLEGITIIQVDGDENRCGNRVSFKFCDPEKRTRFSTGWKLFTHKYNLQAGDCCIFEMTQQAPPLSFKVTIIRAKELPSFMQLKGHGNGANRGKNKYKQETGAVKKLGNSQSFGKRKGKGSRGILRRSPKTIVTKNIEAMLELNNNVVKFFVLNYFCSIAYQDGSWRDTDVMENS. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05260 455 CDD B3_DNA 223 353 IPR003340 GO:0003677
Seca10g05260 455 PANTHER B3 DOMAIN-CONTAINING 8 339 - -
Seca10g05260 455 CDD B3_DNA 12 103 IPR003340 GO:0003677
Seca10g05260 455 SMART B3_2 14 106 IPR003340 GO:0003677
Seca10g05260 455 SMART B3_2 257 355 IPR003340 GO:0003677
Seca10g05260 455 Gene3D - 203 357 IPR015300 -
Seca10g05260 455 Gene3D - 8 107 IPR015300 -
Seca10g05260 455 SUPERFAMILY DNA-binding pseudobarrel domain 268 355 IPR015300 -
Seca10g05260 455 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Seca10g05260 455 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
Seca10g05260 455 SUPERFAMILY DNA-binding pseudobarrel domain 14 106 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05260 Seca-Chr10 120097136 120099663 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05260 14 378 B3 DNA Binding Superfamily AT3G18990 26.650 7.34e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05260 B3 5.7e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05260 - - lja:Lj0g3v0114559.1 252.292