Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05257 ATGATTCCAAGGAGTTTTGTGAAGAGATATGGGAAAGAATTATCAAGCCCAGTAACCCTTATGCTCCCAAATAGTCCTAAATGGAAAGTTTCATTGATAAAACGTGACCATGATATTCTGTTTCAGAAAGGTTCGGAGAGATTTGCCCAACACTATTCGCTGACTTGTGGGAGTTTCTTAGTTTTTAAATATAAAAGAGGATCTTGTTTCCATGTTCAGATATTTGGTGTGAGTTCTTTGGAAATAGACTATTGGAACATAAAATCCACAGATGATGATGGTGAAAGGACTACTGAAAATTATGAAGACTCTGAAAAAAGTGATGAAGATGATGATGACTCTGTTGAGATTCTTGAGGATAGTGAATCACCCCAACCTCATAAAAGAAGTAAAATTAATGATGATCCATCAAGTAGGAATTGCTCAAGAAGTGAAGCTATTGAAAGAAAGAATGAGGCAGTACTAAAAGCAGCCAAAGAGAGGGCTTTAGAAAGAGCTAGAGATTTTCACTCTGAGAATCCCTTTTTCATTCGTCCATTGTGCGCTTCTTACATTCAAAATACTGTTATACCAACAGGGTTTTCCAGAGAATATTTGGATGGGTACAATGGGAATGTAAGCATTGCGGTTGATGAGGACATGCCTTTGTCTGTGAAGTTCAAATTCAATGCTAACAATAACAGATCTTTTATGACCACCGGTTGGACGCAATTTTCCCAGAAATATAATTTACAAGAGGGTGACGTTTGTGTATTTGAGATGATTGACTGCACAAAATTTATGTTCAAAGTCATTATTTACCGAGCCAGAGAACAACCAAACTCTGACCAGCTTCAAGGTTAA 843 0.3701 MIPRSFVKRYGKELSSPVTLMLPNSPKWKVSLIKRDHDILFQKGSERFAQHYSLTCGSFLVFKYKRGSCFHVQIFGVSSLEIDYWNIKSTDDDGERTTENYEDSEKSDEDDDDSVEILEDSESPQPHKRSKINDDPSSRNCSRSEAIERKNEAVLKAAKERALERARDFHSENPFFIRPLCASYIQNTVIPTGFSREYLDGYNGNVSIAVDEDMPLSVKFKFNANNNRSFMTTGWTQFSQKYNLQEGDVCVFEMIDCTKFMFKVIIYRAREQPNSDQLQG. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05257 280 CDD B3_DNA 174 268 IPR003340 GO:0003677
Seca10g05257 280 Gene3D - 1 79 IPR015300 -
Seca10g05257 280 Pfam B3 DNA binding domain 1 75 IPR003340 GO:0003677
Seca10g05257 280 Pfam B3 DNA binding domain 187 268 IPR003340 GO:0003677
Seca10g05257 280 MobiDBLite consensus disorder prediction 104 119 - -
Seca10g05257 280 ProSiteProfiles B3 DNA-binding domain profile. 1 78 IPR003340 GO:0003677
Seca10g05257 280 MobiDBLite consensus disorder prediction 92 144 - -
Seca10g05257 280 CDD B3_DNA 1 75 IPR003340 GO:0003677
Seca10g05257 280 SUPERFAMILY DNA-binding pseudobarrel domain 1 78 IPR015300 -
Seca10g05257 280 PANTHER B3 DOMAIN-CONTAINING 1 262 - -
Seca10g05257 280 SUPERFAMILY DNA-binding pseudobarrel domain 170 271 IPR015300 -
Seca10g05257 280 ProSiteProfiles B3 DNA-binding domain profile. 173 270 IPR003340 GO:0003677
Seca10g05257 280 Gene3D - 153 272 IPR015300 -
Seca10g05257 280 SMART B3_2 176 270 IPR003340 GO:0003677
Seca10g05257 280 SMART B3_2 1 78 IPR003340 GO:0003677
Seca10g05257 280 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05257 Seca-Chr10 120070229 120072122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05257 2 269 B3 DNA Binding Superfamily AT3G18990 29.688 1.37e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05257 B3 1.4e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05257 - - tpra:123913572 234.572