Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05253 ATGTTGAAAGTTCTGTATATGCAGAAGATTCCAAACAATTTCACTAGGAAATATGGTGGTGATATGTCAAACCCAATACTTCTCAAGCCTCCAGATGGCACCGAATGGAAAATGAATTGGACTAAACATGATGGTGATATTTGGCTTCAAGAGGGTTGGAAAGAATTTGCTACACATTACTCCCTGGATTACGGGCATATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGAGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGCCAGCCAAGATGAACAGGACAACATTGACCAGATTAGTGATGAATCAGTTGAAATTTTGGATAATCAACCTCCATCTACATGCAAGAAGACTACCTCCAAGTCATGTCCTCAACCACGTAGGAAATTGAGAACTGGCACAAGTGGAGGTGTTGGAAGTAGCCCCAAATTACAAAATTCACCTGAACATGCCAATATAAAAGGTAAAATCAGACTATCAGAATCAACATTTGCATCTGTCATTAAAGAATTGAATGAGGATGTGAGTCGTACCACTCAATGCCAAAAAGTGGACCAGTTAAATTCTAAAATTTATGAAGCTTTAAACAGAGCTGAAGCCTTCAGATCTAAATATCCCTCTTTCATTGTTGTCATGAAACCTTCCTATGTTGGTCGTGGAAACTTGAGTATCTCATCACAATTTGCAGAAAAATATTTGAAAGAAAATCAAAGGGATATCCTCCTTCAGGTCTTGGATGGGAGAACTTGGCATGGTAGATATATTTTCAGAAAAGTTGGTAGATATAGTAATGTCCAAGTTACTTCTGGATGGAAGAAATTTGCATCAGATAATAATTTGAAAGAGGGGGATGTTTGTCTTTTTGAGTTGACCAAAAGCCGACCCCTTTCTTTCAAAGTTTTAATCTTTCGAGTTGGGGAAGAACCACATTCCCTTCCCCCACAAGGTGAGGCAACTCAGCGAACTTCACTGCACCCCATCACAGGTGGAGCTCTGAAAGAAGCTAATAAATTCACCTCAGAGAATCCCTTTTTCAAAGTCTATATAAAGCCAAGTTCTACTAAGATATACAGACCGAAGAAGACCTTGATGTTACAAATTGGAAAGAAATTGTGGCCTGTAAGGGTGCTCCGTTATCCATATGAAGGTTCAAGCAAGTTGTCTGGAGGTTGGACCCGATTTGCCAGAGAAAATAAATTGTTAGATGGAGATGTTTGTGTCTTTGAGCTCATCAACAACAGGAAAGATGCTGTGTTTCATGTTCATATTTTCAGAGGACACTGTTAG 1311 0.3883 MLKVLYMQKIPNNFTRKYGGDMSNPILLKPPDGTEWKMNWTKHDGDIWLQEGWKEFATHYSLDYGHMVLFEYKDTSHFEVHIFDKTTLEIQYPFHASQDEQDNIDQISDESVEILDNQPPSTCKKTTSKSCPQPRRKLRTGTSGGVGSSPKLQNSPEHANIKGKIRLSESTFASVIKELNEDVSRTTQCQKVDQLNSKIYEALNRAEAFRSKYPSFIVVMKPSYVGRGNLSISSQFAEKYLKENQRDILLQVLDGRTWHGRYIFRKVGRYSNVQVTSGWKKFASDNNLKEGDVCLFELTKSRPLSFKVLIFRVGEEPHSLPPQGEATQRTSLHPITGGALKEANKFTSENPFFKVYIKPSSTKIYRPKKTLMLQIGKKLWPVRVLRYPYEGSSKLSGGWTRFARENKLLDGDVCVFELINNRKDAVFHVHIFRGHC. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05253 436 ProSiteProfiles B3 DNA-binding domain profile. 1 86 IPR003340 GO:0003677
Seca10g05253 436 SMART B3_2 216 314 IPR003340 GO:0003677
Seca10g05253 436 SMART B3_2 1 86 IPR003340 GO:0003677
Seca10g05253 436 SMART B3_2 352 435 IPR003340 GO:0003677
Seca10g05253 436 MobiDBLite consensus disorder prediction 115 159 - -
Seca10g05253 436 Gene3D - 336 435 IPR015300 -
Seca10g05253 436 Gene3D - 196 315 IPR015300 -
Seca10g05253 436 SUPERFAMILY DNA-binding pseudobarrel domain 346 434 IPR015300 -
Seca10g05253 436 Pfam B3 DNA binding domain 216 312 IPR003340 GO:0003677
Seca10g05253 436 Pfam B3 DNA binding domain 9 85 IPR003340 GO:0003677
Seca10g05253 436 Pfam B3 DNA binding domain 365 434 IPR003340 GO:0003677
Seca10g05253 436 SUPERFAMILY DNA-binding pseudobarrel domain 7 85 IPR015300 -
Seca10g05253 436 ProSiteProfiles B3 DNA-binding domain profile. 215 314 IPR003340 GO:0003677
Seca10g05253 436 SUPERFAMILY DNA-binding pseudobarrel domain 209 313 IPR015300 -
Seca10g05253 436 CDD B3_DNA 352 433 IPR003340 GO:0003677
Seca10g05253 436 ProSiteProfiles B3 DNA-binding domain profile. 380 435 IPR003340 GO:0003677
Seca10g05253 436 Gene3D - 3 87 IPR015300 -
Seca10g05253 436 CDD B3_DNA 10 84 IPR003340 GO:0003677
Seca10g05253 436 CDD B3_DNA 214 312 IPR003340 GO:0003677
Seca10g05253 436 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 341 434 IPR044837 -
Seca10g05253 436 MobiDBLite consensus disorder prediction 115 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05253 Seca-Chr10 120026485 120028600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05253 324 433 B3 DNA Binding Superfamily AT3G18990 36.000 1.64e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05253 B3 5.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05253 - - lja:Lj5g3v0508090.1 451.055