Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05252 ATGCAGAAGATTCCAAACAATTTCACTAGGAAATATTGTGTTGATATGTCAAATCCAATATTTCTCAAGCCTCCAGATGGCACTGAATGGAAAGTGTATTGCAGTAAAGTGGATGGTGATATTTGGCTTCAAGAGGGTTGGAAAGAGTTTTCTACTCATTACTCCCTTGATTACGGGCATATGGTGTTGTTTAAATACAAGGGTACTTGTCATTTTGAGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGCCAATCAAGATGAACAAGACAACATTGACCAGATTAGTGATGACTCAGTTGAAATTTTGGATAATCTACCTCCATCTACATGCAAGAAAACTACCTTCAAGTCATGTCCTCAACCACGTAAGAAATTAAGGACTGCCACAAGTGAAGGTGTTGGAAGTAGCCCCAAATTACAAAATTCACCTGAACATGCCAATATAAAAGAGGATGTGAGTGGTACCACTCAATGCCAAAAAGTGGAGCAGTTAAATTCTAAAATTATTAGAGCTTTAAACAGAGCTGAAACATTCAGATCTAAAAATCCCTCTTTCATTGTTGTCATGAAACCTTCCTATGTTGATCGTGGAATCTTGGAAAATCAAAGGGATATCCTCCTTCAGGTCTTGGATGGGAGAACTTGGCATGGTAGATATATTTTCAGAAAAGCTGGTAAATATAGTAACGTCCAAATAACTTCTGGATGGAAGAAATTTGCATCAGATAATAATTTGAAAGAGGGGGATGCTTGTCTTTTTGAGTTGACCAAAAGCCAACAGCTTTCTTTGAAAGTTCTAATCTTTCGAGTTGGGGAAGAACAACATTCCCCTCCACCATAA 861 0.3751 MQKIPNNFTRKYCVDMSNPIFLKPPDGTEWKVYCSKVDGDIWLQEGWKEFSTHYSLDYGHMVLFKYKGTCHFEVHIFDKTTLEIQYPFHANQDEQDNIDQISDDSVEILDNLPPSTCKKTTFKSCPQPRKKLRTATSEGVGSSPKLQNSPEHANIKEDVSGTTQCQKVEQLNSKIIRALNRAETFRSKNPSFIVVMKPSYVDRGILENQRDILLQVLDGRTWHGRYIFRKAGKYSNVQITSGWKKFASDNNLKEGDACLFELTKSQQLSLKVLIFRVGEEQHSPPP. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05252 286 ProSiteProfiles B3 DNA-binding domain profile. 179 278 IPR003340 GO:0003677
Seca10g05252 286 MobiDBLite consensus disorder prediction 136 161 - -
Seca10g05252 286 CDD B3_DNA 4 78 IPR003340 GO:0003677
Seca10g05252 286 Gene3D - 172 279 IPR015300 -
Seca10g05252 286 SUPERFAMILY DNA-binding pseudobarrel domain 187 279 IPR015300 -
Seca10g05252 286 Gene3D - 1 81 IPR015300 -
Seca10g05252 286 MobiDBLite consensus disorder prediction 128 161 - -
Seca10g05252 286 PANTHER B3 DOMAIN-CONTAINING 3 266 - -
Seca10g05252 286 Pfam B3 DNA binding domain 207 276 IPR003340 GO:0003677
Seca10g05252 286 Pfam B3 DNA binding domain 3 79 IPR003340 GO:0003677
Seca10g05252 286 Coils Coil 168 188 - -
Seca10g05252 286 SUPERFAMILY DNA-binding pseudobarrel domain 3 79 IPR015300 -
Seca10g05252 286 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Seca10g05252 286 SMART B3_2 1 80 IPR003340 GO:0003677
Seca10g05252 286 SMART B3_2 192 278 IPR003340 GO:0003677
Seca10g05252 286 CDD B3_DNA 190 276 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05252 Seca-Chr10 120000286 120001427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05252 3 279 B3 DNA Binding Superfamily AT3G18990 29.358 2.24e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05252 B3 1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05252 - - lja:Lj5g3v0508090.1 355.525