Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05251 ATGACTAGCAAGAAGCATTCTGTTCCCTCTGTGATCCGTTTCTTTAAGATCATCACAACAACATGTCTTGAAGCTCAAAAGCTTAAAGTTCTGTATATGCAGAAGATTCCAAACAATTTCACTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAATATATTTGACTAAAAATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTTGATTACGGGCATATGGTGTTGTTTGAATACAAGGGTACTTCTCATTTTGAGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGGCAACCAAGATGAACAGGACAAGATTAGTGACAACTCTGTTGAAATTTTGGAAGAACTATCTCCATCTTCATGCAACAAGAGGAAGACTAAACTGAAATCACCAATGCCATGTCCTCAACCATGTCAGAAATTTAGAACTGGCACAAGTGGAGGTGTTGGAAGTAGCCCCAAATTGCAAAATTTACCTGAACATGTCTATATAAAAGATGAAGTGGGTGGTACCACTACTACCACTGAAAGCCAAAAAGTGGAGCAGTTAAATCTTAAAATTACTGAAGCTATAAACAGAGCCAGAGTCACAACCTTCGGATCTAAAAATCCTTCTTTCATTGTTGTCATGAAACCTTCCTATATTCGACATGGATTGCATGTCCCATTACAATTTGGAGAAAAATATTTGAAGAAAAAAAGAAAATTGGATATCCTCCTTCAGGTGTTGGATGGGAGAACTTGGCCATGTAAATATATTCACAACATAATTAGTGCTGGATGGAGGAAATTTGTATCAGATAATAATTTGAAATTGGGGGATGTTTGTCTTTTTGAGTTGACCAATAGCCAACCCCTTTCTTTCAAAGTTTTAATCTTTCAAGTTGGGGAAGAACCACATTACCCTCCACCACAAGGTGACAAGGCAGATGGAGCTATGAAAGAAGCTAATAAATTCACCTCTGAGAATCCCTTTTTCACAGTCAATATAAAGCCTTTTTCTGGGAGGGTACACAGACCGTGTGTACCAAGAACCTTTGTCAATAATAAGAAGACCTTCATGTTACAATTTGAAAAGAAGTTGTGGCCTGTAAAGAGGCCACAGTTAGGCAATCCATTTGGAGCTGTTGAGTCTGAGCCTAGCAAGATATTGGAAGATTTCAGGTTTCCATGTGTTAAGCCTAGGTTTTGGTATATAGCAATTTTAAGGCATGATGTCCACAACAGAGGGGTTCCCCTAGGCCTAGCAGAAATTTCTGTTCCTGCAGTATGTCATGAAAACATCTCTTCTGTCAGTTATCAATTTCATGTAAAGAAGCTGAAAATTTCTATTCAATATACTCTTCAGAGCAAAGGCATGAAATTGGTGTTGTTCATTTTATTGCATAAAGCACTTAAGGTTTCCTTAGAATGA 1488 0.3777 MTSKKHSVPSVIRFFKIITTTCLEAQKLKVLYMQKIPNNFTRKYGGDMSNPMFLKPPDGTEWEIYLTKNDGDIWFQKGWKEFATYYSLDYGHMVLFEYKGTSHFEVHIFDKTTLEIQYPFHGNQDEQDKISDNSVEILEELSPSSCNKRKTKLKSPMPCPQPCQKFRTGTSGGVGSSPKLQNLPEHVYIKDEVGGTTTTTESQKVEQLNLKITEAINRARVTTFGSKNPSFIVVMKPSYIRHGLHVPLQFGEKYLKKKRKLDILLQVLDGRTWPCKYIHNIISAGWRKFVSDNNLKLGDVCLFELTNSQPLSFKVLIFQVGEEPHYPPPQGDKADGAMKEANKFTSENPFFTVNIKPFSGRVHRPCVPRTFVNNKKTFMLQFEKKLWPVKRPQLGNPFGAVESEPSKILEDFRFPCVKPRFWYIAILRHDVHNRGVPLGLAEISVPAVCHENISSVSYQFHVKKLKISIQYTLQSKGMKLVLFILLHKALKVSLE. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05251 495 ProSiteProfiles B3 DNA-binding domain profile. 229 321 IPR003340 GO:0003677
Seca10g05251 495 SMART B3_2 231 321 IPR003340 GO:0003677
Seca10g05251 495 SMART B3_2 14 112 IPR003340 GO:0003677
Seca10g05251 495 SUPERFAMILY DNA-binding pseudobarrel domain 10 111 IPR015300 -
Seca10g05251 495 CDD B3_DNA 229 318 IPR003340 GO:0003677
Seca10g05251 495 Gene3D - 9 113 IPR015300 -
Seca10g05251 495 PANTHER B3 DOMAIN-CONTAINING 5 309 - -
Seca10g05251 495 Pfam B3 DNA binding domain 35 111 IPR003340 GO:0003677
Seca10g05251 495 Pfam B3 DNA binding domain 233 319 IPR003340 GO:0003677
Seca10g05251 495 CDD B3_DNA 13 110 IPR003340 GO:0003677
Seca10g05251 495 Gene3D - 211 322 IPR015300 -
Seca10g05251 495 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Seca10g05251 495 SUPERFAMILY DNA-binding pseudobarrel domain 224 319 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05251 Seca-Chr10 119990657 119993754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05251 14 322 B3 DNA Binding Superfamily AT3G18990 28.895 7.39e-36 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca10g05251 B3 2.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05251 - - lja:Lj5g3v0508090.1 419.468