Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05238 ATGATGAGGAGATACCAGAGGAGGAAGTTGAATTTGGAGTTGGACCTGAACCAAACTCCGCCACTGGAGGAACCTTCTGCTCCACAACAGCAGCAGCAGCAACAGCTAATTATGATTGACGTGGAGGCCATTGATGATGATGTTATTGAATCCTCACCCAGGGCTTTTGCTCAGGCTAAGACCAATGCGAGGAGGAATCGGAGGAGGACTATAGTTGACGTGGATTCGGGTCTTGCCTCATTAGAGGGTTATGCTGTAGTTGAACCTGCTAATTTTACTGATGAAGAAAATCAGACCAGGGCAACTAATAATGATCACAGTGGATGCAGAAGAGATCGCTCAATCCAACGAATTATTAACAGTGATCTTTATATCAATTTGGAAGGCAGTAGCAGTTCTTTGAATGAGAATGCTAGAAAATCACCTGAACGTCCTGAACCTCCAAAGGAGCCTGTCTTTAACTGCCCAATATGTATGGCTCCTTTGACAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAGGAAGTGCATTAGAACTGCTATAAATGCACAGGGTAAATGCCCTACTTGTAGGAAAAAGGTTACTATGAGAGAGCTGATAAGGGTGTTTCTTCCATCAGCTAGTTGA 633 0.4344 MMRRYQRRKLNLELDLNQTPPLEEPSAPQQQQQQQLIMIDVEAIDDDVIESSPRAFAQAKTNARRNRRRTIVDVDSGLASLEGYAVVEPANFTDEENQTRATNNDHSGCRRDRSIQRIINSDLYINLEGSSSSLNENARKSPERPEPPKEPVFNCPICMAPLTEEMSTRCGHIFCRKCIRTAINAQGKCPTCRKKVTMRELIRVFLPSAS. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05238 210 ProSiteProfiles Zinc finger RING-type profile. 155 193 IPR001841 -
Seca10g05238 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 208 IPR013083 -
Seca10g05238 210 Pfam Zinc finger, C3HC4 type (RING finger) 154 192 - -
Seca10g05238 210 PANTHER ELFLESS, ISOFORM B 3 208 - -
Seca10g05238 210 SMART ring_2 155 192 IPR001841 -
Seca10g05238 210 SUPERFAMILY RING/U-box 154 199 - -
Seca10g05238 210 ProSitePatterns Zinc finger RING-type signature. 170 179 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05238 Seca-Chr10 119751199 119755025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05238 4 208 C3H Transcription Factor Family AT5G48655 44.037 1.08e-42 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05238 K22651 - cave:132188663 185.267