Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05233 ATGTCTAACTTGGTTCAACTTCCCTCCAACCTTTTGCCATCTGATGCAAGCCCTGATTGGATGAACAAAGCTGACAATGCATGGCAACTCACAGCTGCTACACTTGTTGGCCTTCAAAGTGTTCCTGGTCTCATAATTTTGTATGGTGGAGCTGTTAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTCACTCTATGCTTTTGCTTGTGTTTTTTTCTGTTGGGTTATTTGGGGTTATAGGATGTCTTTTGGTGATAAGCTTTTTCCTTTCTGGGGAAAACCTGCTGTTGCATTAGATCAGGGTTATCTTTTCAAGCCAGCTTTTTTGGGGGCTTTCCCAAATGCCACAATGGTGTATTTCCAATGTGTCTTTGCTGCCATCACTTTGATTTTGATAGCAGGGGCTCTGTTGGGTCGCATGAACTTTTATGCTTGGATGTTGTTTGTACCTTTATGGCTTACCTTCTCCTACACCTTCACAGCATTTAGCATATGGAGTACCAATGGATTTCTATCCAAAATGGGCATAATCGATTATTCAGGTGGTTATGTCATCCATTTGTCTTCTGGGGTTGCTGGATTCACAGCTGCATATTGGGTAGTTGGACCACGCCTAAACAAGGATAGGGAAAGGTTCCCTCCAAACAACATACTTCTAATGCTAGCTGGAGCAGGGCTGCTATGGATGGGGTGGACAGGGTTCAATGGAGGAGACCCTTACACAGTGAGCATGGATGCTTCCTTGGCTGTCTTGAACACTCATGCTTGCACTGCTACCAGCTTGCTTACTTGGGTCATCCTTGATGTCATATTTTTCCGAAAGCCTTCTGTAATTGGAGCAGTTCAAGGCATGATCACTGGTTTGGTTTGCATAACCCCAGCTGCAGGGGTTGTGCAAGGATGGGCAGCACTTATAATGGGAGTTTTCTCAGGGTCAATTCCTTGGTTCACTATGATGGTAATCCATAAGAGATCAAAGCTGCTACAGAAGGTGGATGATACAATGGCAGTGTTGCACACACATGCCATTGCAGGAAGCCTTGGAGGGATCCTCACAGGGCTCTTTGCTGAGCCAAGATTAAACTACTTGTTCTATGGCAATTATAATAAATACGTTGGTCTATTTTATGGCTTCCAATCGAACTTGGTCAAAAATGGGATCAGGCAAATACTAATCCAACTTCTTGGGATTTTGTTTGTTATCTTTGTTAATGTCATAAGCACAAGTTTGATATGCCTCTTGATTCGATTTGTGGTTCCTTTAAGAATGTCTGAAGAGGATATGGAAATAGGTGATGAAGCTGCTCATGGAGAAGAAGCTTATGCCATCTGGGGTCAGGGTGATAAGCTTGAAAATTCAAGTTCAAAGTATGGAAGTTCATTATATGATGATGTTGAAGCAGGGGCCACTAAGAACAAGCGTGGTGGCCAGCTTGAGATGATGTAG 1449 0.4327 MSNLVQLPSNLLPSDASPDWMNKADNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVIWGYRMSFGDKLFPFWGKPAVALDQGYLFKPAFLGAFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTNGFLSKMGIIDYSGGYVIHLSSGVAGFTAAYWVVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSMDASLAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPRLNYLFYGNYNKYVGLFYGFQSNLVKNGIRQILIQLLGILFVIFVNVISTSLICLLIRFVVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYGSSLYDDVEAGATKNKRGGQLEMM. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05233 482 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005886
Seca10g05233 482 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005886
Seca10g05233 482 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005886
Seca10g05233 482 SUPERFAMILY Ammonium transporter 20 424 - -
Seca10g05233 482 Pfam Ammonium Transporter Family 27 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca10g05233 482 NCBIfam ammonium transporter 25 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca10g05233 482 PANTHER AMMONIUM TRANSPORTER MEP2 9 454 IPR001905 GO:0008519|GO:0016020|GO:0072488
Seca10g05233 482 Gene3D Ammonium transporter AmtB like domains 10 446 IPR029020 -
Seca10g05233 482 FunFam Ammonium transporter 10 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05233 Seca-Chr10 119634207 119637747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05233 116 478 Inorganic Solute Cotransporters AT2G38290 61.157 3.06e-143 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05233 K03320 - gmx:100787856 844.728