Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05231 ATGAGTTCCAATTCTAAACAAATTGAGCTTCCCACAGAGGTAGCAAAGGTGGACGATGCTTACCTCTCTGCTTTGTTGCTATGTTTTAGCCGCATCTTCCCTGCAATCTTAAACACTGCTATTGATCTCAATTTGTTTGAGATCATAGCAAAGGCAAAAAGTGGTTCAAGCTTGTCTGCCTCTGAGATTGCTTCTCAACTTCCAAACCAACACCCAGAATTGGCTAATAGGCTTGAACGCATATTGCCTATACTAGCCAGTTATTGTCTTCTAGATTGTTCCATTCGCATCAATGAAGATGGTAACAGAGAAAGAGTCTATGCTCTCACACCCATTGGTCAATACTTTGCTTGTGATGTCAATGGAGGTTCTTTGGGTCCACTCTCACGTTTAATGCATCGAGTCATAAAACCAAATTTTTTTAATATGATTTTGTGTTGTTTCTTTAACAGGAACGACGTAAAGGATGCAATTATGGACCCTAATAATAAAAACCATTTCACAAATATATATGGAATGGCTCTTTATCAATATACAGAGGAAGATAAAGAAATGAATCACATGGTCAACAAAGCAATGGCCCATGCCGGCCCATTAGAAATGAAAAGAATCCTTGAACTGTATAAAGGATTTGAGGGAGTGACAACACTGGTTGATGTTGGAGGTGGAGAAGGGAGAGCATTACAACAGATTATATCTAAGTATCCTTCAATTAAAGGAATTAATTTTGATTTGCCTCAAGTGATTCAATATGCATCACCTCTTCCAGGGATAGAGCATGTTCCAGGAGATATGTTTGAAAGTGTTCCACGGGGTGATGCCATTGTACTAAAGCTTGTATGTCACAATTGGTCAGATGAAGACTGTGTGAAGTTCTTAAGAAATTGTTACAAATCTTTGCCAAAACATGGAAAGGTTATTGTTCTGGACTACATAATGCCTGAAATTCCAAACCCGAGCAATATCTCTAAGCATACCTGCGTTATTGACACTCTAATGTTCCTAGTAAATGAGGGAAAGGAAAGATCTGAGAAAGAGTTTCAGAACTTGTGCATGAGCTCTGGATTTTCCAAATTTCATGTTGCTTGCAGTGATTTCTCAGCCATGTCAGGTGTGATGGAATTTTATAAATAA 1134 0.3836 MSSNSKQIELPTEVAKVDDAYLSALLLCFSRIFPAILNTAIDLNLFEIIAKAKSGSSLSASEIASQLPNQHPELANRLERILPILASYCLLDCSIRINEDGNRERVYALTPIGQYFACDVNGGSLGPLSRLMHRVIKPNFFNMILCCFFNRNDVKDAIMDPNNKNHFTNIYGMALYQYTEEDKEMNHMVNKAMAHAGPLEMKRILELYKGFEGVTTLVDVGGGEGRALQQIISKYPSIKGINFDLPQVIQYASPLPGIEHVPGDMFESVPRGDAIVLKLVCHNWSDEDCVKFLRNCYKSLPKHGKVIVLDYIMPEIPNPSNISKHTCVIDTLMFLVNEGKERSEKEFQNLCMSSGFSKFHVACSDFSAMSGVMEFYK. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05231 377 Pfam O-methyltransferase domain 153 357 IPR001077 GO:0008171
Seca10g05231 377 Gene3D Vaccinia Virus protein VP39 186 364 IPR029063 -
Seca10g05231 377 Pfam Dimerisation domain 36 86 IPR012967 GO:0046983
Seca10g05231 377 FunFam Caffeic acid 3-O-methyltransferase 2 116 - -
Seca10g05231 377 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 377 IPR016461 GO:0008168
Seca10g05231 377 FunFam Uncharacterized protein 117 377 - -
Seca10g05231 377 CDD AdoMet_MTases 216 313 - -
Seca10g05231 377 PIRSF O-mtase 1 377 IPR016461 GO:0008168
Seca10g05231 377 PANTHER O-METHYLTRANSFERASE 30 366 IPR016461 GO:0008168
Seca10g05231 377 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 162 367 IPR029063 -
Seca10g05231 377 Gene3D - 32 204 IPR036388 -
Seca10g05231 377 SUPERFAMILY "Winged helix" DNA-binding domain 18 117 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05231 Seca-Chr10 119578227 119580913 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05231 1 367 Monolignol Biosynthesis Gene Families AT5G54160 44.444 2.21e-102 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05231 - - aprc:113869089 521.931