Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05226 ATGAGTTCCAATAATTCTAAACAAAATGAGGTTGCAAAGGTTGATGATGCTTACCTCTCTGCTTTGTTGCTATCTTTTAGCCGTGTCTTTCCTGCAATCCTAAATGCTGCTATTGAACTCAATATTTTTGATATCATAGCTAAGTCATGTGATGAATATTCAACCTTATCTGCCTCTGAGATAGCTTCCCAACTTCCAAATCAACACCCAGAATTGGCCACTAGGCTTGAGCGCATATTGACTGTGCTAGCCAGTTATTCTCTTCTAACTTGCTCCATTCGGACCAATGAAGATGGTGAGAGAGAAAGAGTTTATGCACTCTCACCCATTGGTCAATACTTTGCATGTGATAAAGATGGGGGCTCTTTGGCTCCACTCTCAACTTTAGTGCATCGAGGATATCATAACATTTGGGATGATGTAAAAGATGCAATTTTGGACCTTAATAATAATAACCATTTCCAAAAGGTCTATGGACTGCCGGCTTATCAATATATGGAGAAAGATAAAGAGCTAAATAACATTTTTAATGAAGCAATGGCTCAATCCGGTCCATTAGAGATGAAAAGGATCCTTGAATTATATAAAGGATTTGAGGGAGTCTCAACATTGGTTGATGTAGGAGGTGGAGTAGGGCAGGCCTTAAAATTGATTCTTTCTGAATATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTGATTCAACATGCACCTCCTCATCCAGGGATAGAGCATGTAGGAGGAGACATGTTTGAAAGCGTTCCAAAGGGTGATGCCATTTTACTTAAGCTTGTATGTCATAATTGGTCAGATGAAGAATGTGTGAAGTTTTTAAAAAATTGCCACAAGGCTTTGCCACAAGATGGGAAGGTGATTGTTCTGGACTATATAATTCCAGAAGTCCCCAATTCAAGCCGAATATCTAAGCATACTTGTATTATTGACAATCTCATGTTTTTAGCAGCTAATGGAAAGGAGAGAACTGAGAAAGAATTTGAGAGCTTATGCAAGAGCTCTGGATTTTCCAGATTTCATATTGCATGTAGTGATTTCTCAGTTATGTCTGGAGTAATGGAATTTTATAAATAA 1095 0.3781 MSSNNSKQNEVAKVDDAYLSALLLSFSRVFPAILNAAIELNIFDIIAKSCDEYSTLSASEIASQLPNQHPELATRLERILTVLASYSLLTCSIRTNEDGERERVYALSPIGQYFACDKDGGSLAPLSTLVHRGYHNIWDDVKDAILDLNNNNHFQKVYGLPAYQYMEKDKELNNIFNEAMAQSGPLEMKRILELYKGFEGVSTLVDVGGGVGQALKLILSEYPSIKGINFDLPQVIQHAPPHPGIEHVGGDMFESVPKGDAILLKLVCHNWSDEECVKFLKNCHKALPQDGKVIVLDYIIPEVPNSSRISKHTCIIDNLMFLAANGKERTEKEFESLCKSSGFSRFHIACSDFSVMSGVMEFYK. 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05226 364 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Seca10g05226 364 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 22 364 IPR016461 GO:0008168
Seca10g05226 364 Gene3D Vaccinia Virus protein VP39 173 351 IPR029063 -
Seca10g05226 364 CDD AdoMet_MTases 203 300 - -
Seca10g05226 364 PANTHER O-METHYLTRANSFERASE 24 353 IPR016461 GO:0008168
Seca10g05226 364 FunFam Caffeic acid 3-O-methyltransferase 1 114 - -
Seca10g05226 364 FunFam Uncharacterized protein 115 364 - -
Seca10g05226 364 Pfam O-methyltransferase domain 138 344 IPR001077 GO:0008171
Seca10g05226 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 361 IPR029063 -
Seca10g05226 364 Pfam Dimerisation domain 33 84 IPR012967 GO:0046983
Seca10g05226 364 Gene3D - 29 191 IPR036388 -
Seca10g05226 364 SUPERFAMILY "Winged helix" DNA-binding domain 15 118 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05226 Seca-Chr10 119501005 119502932 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05226 15 355 Monolignol Biosynthesis Gene Families AT5G54160 50.872 1.08e-118 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05226 - - aprc:113869089 550.821