Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g05224 ATGAGTTCCAATTCCAAACAAAACCAGCTTCCTATAGATCAAGAAACAGAGGTTGATGCAGCTTACCTCTCTGCTCTGTTTCTAAGCTTTAGCAGGGTCTTTCCTGCAATTCTAAACGCTGCTGTTGATCTCAATTTGTTTGAGATAATAGGTAAGGCACAAAGTTCATGTGGTTCTTCATCCTTGTCTGCCTCTGAAATTGCTTCTCAATTCCCAAACCAACACACGCAATTAGCAAAAAGGCTTGAACGCATGTTGCCTGTGTTGGCTAGTTATTCTCTTCTAACTTGCTCCATTCGCACCAATGAAGATGGTAAAAGAGAAAGAGTTTATGCTCTCTCTCCCGTTGGTCAATACTATTTGTGTGACAATGACGGAGAATCTTTGGGTCCATTCTCATCTTTAGTGCATCGAGGATTTGGTCAAGTTTGGAATGATGTAAAGGATGCATTCGTGGACCCTAATAGCAATAACCTTTTTCAGAAAGTTCATGAAGTGCCTCTTTTTCAATATATGGAGCAAGATCAAGAGCTTAATCATATGTTTAACAAAGCAATGGCCCAAGCCAGCCCATTAGAAGTGAAAATGATCCTTAAACAATATAAAGGATTTGAGGGATTATCAACACTGGTTGATGTAGGAGGTGGAGTAGGGTTGTCCTTAAAATTGATTATTTCTGAATATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTGATTGAAGATGCACCGCCTCATCCAGGTAACACCAATGATAAGAAAATCCAACCAGACTAA 783 0.3908 MSSNSKQNQLPIDQETEVDAAYLSALFLSFSRVFPAILNAAVDLNLFEIIGKAQSSCGSSSLSASEIASQFPNQHTQLAKRLERMLPVLASYSLLTCSIRTNEDGKRERVYALSPVGQYYLCDNDGESLGPFSSLVHRGFGQVWNDVKDAFVDPNSNNLFQKVHEVPLFQYMEQDQELNHMFNKAMAQASPLEVKMILKQYKGFEGLSTLVDVGGGVGLSLKLIISEYPSIKGINFDLPQVIEDAPPHPGNTNDKKIQPD. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g05224 260 SUPERFAMILY "Winged helix" DNA-binding domain 18 124 IPR036390 -
Seca10g05224 260 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 260 IPR016461 GO:0008168
Seca10g05224 260 Pfam O-methyltransferase domain 144 254 IPR001077 GO:0008171
Seca10g05224 260 PANTHER O-METHYLTRANSFERASE 28 245 IPR016461 GO:0008168
Seca10g05224 260 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 248 IPR029063 -
Seca10g05224 260 Gene3D Vaccinia Virus protein VP39 122 258 IPR029063 -
Seca10g05224 260 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Seca10g05224 260 Gene3D - 1 120 IPR036388 -
Seca10g05224 260 FunFam Caffeic acid 3-O-methyltransferase 2 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g05224 Seca-Chr10 119461732 119463897 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g05224 1 250 Monolignol Biosynthesis Gene Families AT5G54160 41.434 1.59e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g05224 - - gmx:100793053 323.553